Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g1192 | ATGGGCCTTGAGCCCATGAGGCCATTTCCACACCCCTACCGGAAAAATGATATAAAAAGGAAAAGCATTAGCAGCCACATTCTCTCCCTTTCAACGCGAGATTGTAGGCTTTCACTTCCAACAATCCCTCGCTGCCACCAGTTATCTCCCGAGAAAAATAGATCATTTGTAGAAGGAACAAGAAAACAACTTTTATATAATGGTTTTCGTAACATAAAGATGGTTTCAAAATCAACATCACATCTGGGCTTTTTTTGTGTGGCTAGGGAAAAAATAACGATGGCTGATCAGGTTCAACATCCTACTGTTTTTCAAAAGGTTGCGGGTCAGCTATACCTTCAATCGAGGGCTTCTCCTGGTTTTCGTGGTGGCCACGATGGCTTCCAGAACCCTGGACTTTATCAGAGACATGCATCATCAGTTAGAAATTACAATTACTCTGGCTTTCAATACCCTGCGGTTCAATCTTGTGCTGCGACAGTGGATCTTTCTAGGGTTGCCTCGACTGTCTCCCCCATTTTTGTTGCTGCTCCTGCAGAGAAAGGCAATTTCTTGATTGATTTTCTTATGGGCGGAGTCTCTGCAGCTGTATCCAAGACGGCTGCTGCTCCAATTGAGCGTGTCAAGCTTTTAATTCAAAATCAGGATGAGATGCTTAAAGCTGGACGGCTCTCTGAGCCATATAAGGGTATTGGTGAGTGTTTTAGCCGCACTATAAAGGATGAGGGATTCGGTTCACTGTGGAGGGGAAACACTGCCAATGTTATCCGTTATTTCCCCACTCAAGCCTTGAACTTTGCATTTAAGGATTACTTTAAAAGGCTTTTCAACTTCAAGAAAGATAGAGATGGTTACTGGAAATGGTTTGCTGGTAACTTGGCTTCAGGTGGTGCAGCCGGTGCTTCATCCCTTCTATTTGTTTACTCTCTTGACTATGCTCGTACCCGATTGGCAAATGATTCCAAAGCTGCTAAGAAAGGTGGAGAAAGGCAATTCAACGGTCTGGTTGATGTCTACAAGAAGACATTAAAATCAGATGGTATTGCCGGTCTTTACCGTGGGTTTAACATTTCATGTGTTGGTATCATTGTGTACCGTGGTCTATACTTTGGAATGTATGATTCTCTGAAGCCAGTTCTATTGACTGGAACTTTGCAGGATAGCTTCTTCGCTAGCTTTGCCCTTGGTTGGCTCATCACCAATGGTGCTGGGCTTGCATCCTACCCCATCGACACTGTTCGTAGAAGGATGATGATGACGTCTGGTGAAGCAGTCAAGTACAAGAGTTCATTTGATGCTTTCTCTCAGATCTTGAAGAATGAAGGTGCCAAGTCTCTCTTCAAGGGTGCTGGCGCCAACATTCTGCGTGCCGTCGCTGGTGCTGGTGTGCTCGCTGGTTATGATAAGTTACAGGTGATCGTTTTGGGGAAGAAATATGGATCTGGTGGTGCTTAA | 1455 | 44.54 | MGLEPMRPFPHPYRKNDIKRKSISSHILSLSTRDCRLSLPTIPRCHQLSPEKNRSFVEGTRKQLLYNGFRNIKMVSKSTSHLGFFCVAREKITMADQVQHPTVFQKVAGQLYLQSRASPGFRGGHDGFQNPGLYQRHASSVRNYNYSGFQYPAVQSCAATVDLSRVASTVSPIFVAAPAEKGNFLIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKAGRLSEPYKGIGECFSRTIKDEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDSKAAKKGGERQFNGLVDVYKKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGTLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSFDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVLGKKYGSGGA | 484 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 7977685 | 7980188 | + | evm.model.ptg000015l.1192 | HCH4g1192 | 543436 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g1192 | 484 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 182 | 275 | IPR018108 | - | |
| HCH4g1192 | 484 | FunFam | ADP,ATP carrier protein, mitochondrial | 185 | 480 | - | - | |
| HCH4g1192 | 484 | PRINTS | Adenine nucleotide translocator signature | 228 | 249 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| HCH4g1192 | 484 | PRINTS | Adenine nucleotide translocator signature | 392 | 408 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| HCH4g1192 | 484 | PRINTS | Adenine nucleotide translocator signature | 261 | 273 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| HCH4g1192 | 484 | PRINTS | Adenine nucleotide translocator signature | 287 | 300 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| HCH4g1192 | 484 | PRINTS | Adenine nucleotide translocator signature | 184 | 196 | IPR002113 | GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| HCH4g1192 | 484 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 387 | 473 | IPR018108 | - | |
| HCH4g1192 | 484 | PANTHER | ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED | 180 | 481 | IPR002113 | GO:0005471(InterPro)|GO:0005471(PANTHER)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro) | |
| HCH4g1192 | 484 | Gene3D | Mitochondrial carrier domain | 185 | 480 | IPR023395 | - | |
| HCH4g1192 | 484 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 287 | 379 | IPR018108 | - | |
| HCH4g1192 | 484 | Pfam | Mitochondrial carrier protein | 387 | 475 | IPR018108 | - | |
| HCH4g1192 | 484 | Pfam | Mitochondrial carrier protein | 287 | 381 | IPR018108 | - | |
| HCH4g1192 | 484 | Pfam | Mitochondrial carrier protein | 182 | 279 | IPR018108 | - | |
| HCH4g1192 | 484 | SUPERFAMILY | Mitochondrial carrier | 182 | 469 | IPR023395 | - | |
| HCH4g1192 | 484 | PRINTS | Mitochondrial carrier protein signature | 302 | 320 | IPR002067 | GO:0055085(InterPro) | |
| HCH4g1192 | 484 | PRINTS | Mitochondrial carrier protein signature | 352 | 370 | IPR002067 | GO:0055085(InterPro) | |
| HCH4g1192 | 484 | PRINTS | Mitochondrial carrier protein signature | 200 | 214 | IPR002067 | GO:0055085(InterPro) | |
| HCH4g1192 | 484 | PRINTS | Mitochondrial carrier protein signature | 187 | 200 | IPR002067 | GO:0055085(InterPro) | |
| HCH4g1192 | 484 | PRINTS | Mitochondrial carrier protein signature | 250 | 270 | IPR002067 | GO:0055085(InterPro) | |
| HCH4g1192 | 484 | PRINTS | Mitochondrial carrier protein signature | 396 | 418 | IPR002067 | GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH4g1192 | HCH-Chr4:7977685 | HCH7g0137 | HCH-Chr7:925822 | 1.60E-166 | dispersed | |
| HCH4g1191 | HCH-Chr4:7974266 | HCH4g1192 | HCH-Chr4:7977685 | 8.30E-200 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH4g1192 | K05863 | - | csv:101203733 | 684.871 |