Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1193 ATGAATGAGGATAGACAAATGGAAGTACACTACATCGACACCGGCTTTCCATACACGGCTACTGAGAGCTTCATGGACTTCTTTGAGGGTTTCAATCATGTTCCTTCCTATGGCAATGCTGGACCATTGCATGATCAGGGAAATGTATATTGGTCAATGAATATGCAATGTTACAAATTTGGAGTATCTGATCATGGGAATACGTATTACGGCCATTCCGAGGAAAATCACCATTTACCTTCAGTAGATGTTGGCGAAAGGGGCTGGGAATATCCTTCGACGGTGAACGTTGAAAATCCCGAAACCGCATATGGCCTACCATCTGTAGAGGAGGATGCTGTTGATGCACATACTGTAGCTGAAGAATGCGATTTAACTTATGACCATGAGGAGACCAGTACTTCGCAAGTTGTTTGGCAAGATGATATTGATCCTGATCACATGACCTATGAGGAATTGTTAGACTTGGGTGAATCAGTCGGAACTCAAAGTCGTGGTCTTTCCAAGGAACAAATAAGTTCGCTTCCAACAGCAAGGTGCAAGTTAACAAGCTTTTTCTCAAGGAAAAAGCCAGAGGAGAGATGTGTGATTTGCCAAATGAGGTACAAGAGAGGGGATAAACAAATAAAACTGCCCTGCAAGCATTTCTACCATAGCAAATGCATAACCAAATGGCTTACCATCAACAAAATATGTCCGATCTGCAATATTGAGGTGCTTGGAGACGAAGATATGAATGCATCAAACGGCGATAATTATCATCAGTAG 768 42.19 MNEDRQMEVHYIDTGFPYTATESFMDFFEGFNHVPSYGNAGPLHDQGNVYWSMNMQCYKFGVSDHGNTYYGHSEENHHLPSVDVGERGWEYPSTVNVENPETAYGLPSVEEDAVDAHTVAEECDLTYDHEETSTSQVVWQDDIDPDHMTYEELLDLGESVGTQSRGLSKEQISSLPTARCKLTSFFSRKKPEERCVICQMRYKRGDKQIKLPCKHFYHSKCITKWLTINKICPICNIEVLGDEDMNASNGDNYHQ 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7987580 7990514 + evm.model.ptg000015l.1193 HCH4g1193 543437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1193 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 240 IPR013083 -
HCH4g1193 255 FunFam E3 ubiquitin ligase BIG BROTHER 157 240 - -
HCH4g1193 255 SUPERFAMILY RING/U-box 188 240 - -
HCH4g1193 255 SMART ring_2 195 235 IPR001841 -
HCH4g1193 255 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
HCH4g1193 255 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 239 IPR033276 GO:0004842(PANTHER)|GO:0004842(InterPro)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0046621(InterPro)|GO:0048437(PANTHER)
HCH4g1193 255 Pfam Ring finger domain 194 236 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1193 HCH-Chr4:7987580 HCH8g0457 HCH-Chr8:39966354 2.30E-47 dispersed
HCH13g0144 HCH-Chr13:923490 HCH4g1193 HCH-Chr4:7987580 5.60E-20 transposed
HCH1g0542 HCH-Chr1:54370863 HCH4g1193 HCH-Chr4:7987580 2.60E-24 transposed
HCH2g1383 HCH-Chr2:55621529 HCH4g1193 HCH-Chr4:7987580 5.50E-51 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1193 K19045 - csv:101210160 433.721