Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH4g1193 | ATGAATGAGGATAGACAAATGGAAGTACACTACATCGACACCGGCTTTCCATACACGGCTACTGAGAGCTTCATGGACTTCTTTGAGGGTTTCAATCATGTTCCTTCCTATGGCAATGCTGGACCATTGCATGATCAGGGAAATGTATATTGGTCAATGAATATGCAATGTTACAAATTTGGAGTATCTGATCATGGGAATACGTATTACGGCCATTCCGAGGAAAATCACCATTTACCTTCAGTAGATGTTGGCGAAAGGGGCTGGGAATATCCTTCGACGGTGAACGTTGAAAATCCCGAAACCGCATATGGCCTACCATCTGTAGAGGAGGATGCTGTTGATGCACATACTGTAGCTGAAGAATGCGATTTAACTTATGACCATGAGGAGACCAGTACTTCGCAAGTTGTTTGGCAAGATGATATTGATCCTGATCACATGACCTATGAGGAATTGTTAGACTTGGGTGAATCAGTCGGAACTCAAAGTCGTGGTCTTTCCAAGGAACAAATAAGTTCGCTTCCAACAGCAAGGTGCAAGTTAACAAGCTTTTTCTCAAGGAAAAAGCCAGAGGAGAGATGTGTGATTTGCCAAATGAGGTACAAGAGAGGGGATAAACAAATAAAACTGCCCTGCAAGCATTTCTACCATAGCAAATGCATAACCAAATGGCTTACCATCAACAAAATATGTCCGATCTGCAATATTGAGGTGCTTGGAGACGAAGATATGAATGCATCAAACGGCGATAATTATCATCAGTAG | 768 | 42.19 | MNEDRQMEVHYIDTGFPYTATESFMDFFEGFNHVPSYGNAGPLHDQGNVYWSMNMQCYKFGVSDHGNTYYGHSEENHHLPSVDVGERGWEYPSTVNVENPETAYGLPSVEEDAVDAHTVAEECDLTYDHEETSTSQVVWQDDIDPDHMTYEELLDLGESVGTQSRGLSKEQISSLPTARCKLTSFFSRKKPEERCVICQMRYKRGDKQIKLPCKHFYHSKCITKWLTINKICPICNIEVLGDEDMNASNGDNYHQ | 255 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7987580 | 7990514 | + | evm.model.ptg000015l.1193 | HCH4g1193 | 543437 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH4g1193 | 255 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 156 | 240 | IPR013083 | - | |
HCH4g1193 | 255 | FunFam | E3 ubiquitin ligase BIG BROTHER | 157 | 240 | - | - | |
HCH4g1193 | 255 | SUPERFAMILY | RING/U-box | 188 | 240 | - | - | |
HCH4g1193 | 255 | SMART | ring_2 | 195 | 235 | IPR001841 | - | |
HCH4g1193 | 255 | ProSiteProfiles | Zinc finger RING-type profile. | 195 | 236 | IPR001841 | - | |
HCH4g1193 | 255 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 239 | IPR033276 | GO:0004842(PANTHER)|GO:0004842(InterPro)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0046621(InterPro)|GO:0048437(PANTHER) | |
HCH4g1193 | 255 | Pfam | Ring finger domain | 194 | 236 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g1193 | HCH-Chr4:7987580 | HCH8g0457 | HCH-Chr8:39966354 | 2.30E-47 | dispersed | |
HCH13g0144 | HCH-Chr13:923490 | HCH4g1193 | HCH-Chr4:7987580 | 5.60E-20 | transposed | |
HCH1g0542 | HCH-Chr1:54370863 | HCH4g1193 | HCH-Chr4:7987580 | 2.60E-24 | transposed | |
HCH2g1383 | HCH-Chr2:55621529 | HCH4g1193 | HCH-Chr4:7987580 | 5.50E-51 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH4g1193 | K19045 | - | csv:101210160 | 433.721 |