Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1195 ATGTCTCCGACTAGGTGTATGAGATCATTAATCCCTCATTTCAATCAGTTTCTCAAATCGGAATCGCTTTCTTCTCAGAAACCTAACGTCCTACTCCTTCGACCCCTAATTTACCCGACCGAGGTCTCGAGGAATTACGCAACCGCTTCTGGGAAAAATGAGCGCAAAGTTAAAGTACCTGTGGTCTTGTTTGGGGGATCTGGAAACTATGCTTCTGCTTTGTATCTTGCAGCAGTAAAAACTAATGTCTTGGATAAGGTTGAGTCTGAGCTCCTTGACCTTGTTGAGGCTTCACAGAGAAGTGCCATTTTTTCTCAATTTACAAGAGATCTCTCAGTGCCTAAAGATACTAGGGTCAAGGCTATTGATGCAATTTGTGCTGAAGCTAAGTTTCCGGATGTTGTCAAAAACTTTTTGGTTGTATTGGCTGAGAATGGAAGGCTGAGATATATTGATAGCATTGCAAAGAGGTTTCTGGAATTGACAATGGCTCATAGAGGAGAAGTGAAAGCCATAGTGACTACAGTTATTCCTCTTCCTGCTGAAGAAGAGAAAGAACTAAAGGAGACATTGCAGGATATCATTGGACAAGGGAAGAAGGTCAAGCTTGAACAGAAGATTGATCCAAGTATACTTGGTGGCCTGGTTGTAGAATTTGGTGAGAAAGTGTTTGATATGTCCATCAAGACCAGAGCAAGGCAGATGGAGAGATTTTTGCGAGAACCTGCTAATCTTGGCAGCCTCTAA 747 42.3 MSPTRCMRSLIPHFNQFLKSESLSSQKPNVLLLRPLIYPTEVSRNYATASGKNERKVKVPVVLFGGSGNYASALYLAAVKTNVLDKVESELLDLVEASQRSAIFSQFTRDLSVPKDTRVKAIDAICAEAKFPDVVKNFLVVLAENGRLRYIDSIAKRFLELTMAHRGEVKAIVTTVIPLPAEEEKELKETLQDIIGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLREPANLGSL 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7995219 7997420 + evm.model.ptg000015l.1195 HCH4g1195 543439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1195 248 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 201 220 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
HCH4g1195 248 NCBIfam ATP synthase F1 subunit delta 69 238 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH4g1195 248 Gene3D - 66 159 IPR026015 -
HCH4g1195 248 PANTHER ATP SYNTHASE DELTA CHAIN 26 242 IPR000711 GO:0000274(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
HCH4g1195 248 Pfam ATP synthase delta (OSCP) subunit 68 237 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH4g1195 248 PRINTS ATP synthase delta subunit signature 147 161 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH4g1195 248 PRINTS ATP synthase delta subunit signature 66 85 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH4g1195 248 PRINTS ATP synthase delta subunit signature 199 214 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH4g1195 248 PRINTS ATP synthase delta subunit signature 214 232 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH4g1195 248 PRINTS ATP synthase delta subunit signature 136 147 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH4g1195 248 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 67 168 IPR026015 -
HCH4g1195 248 Hamap ATP synthase subunit delta [atpD]. 62 241 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1195 HCH-Chr4:7995219 HCH6g0354 HCH-Chr6:5594265 1.30E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1195 K02137 - csv:101206351 334.339