Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1209 ATGGCGAGGAGGAGGTTTCGCGAGCAACAAAGATCATTAGCTGCAGCAGACCATTCATGCACGATTCGTTTGACTGAAATTTTTGGAAGAGCAACGAAACATATATTGGGATTCTTTCTCATGGTTGGTGTTTGCAATGCCATGCATTATCTTCTTAGACCATTTTCTCAGCCTCGCATAACCTCTGACACATTTGTAGGTTTGGTTATGGGCAACTTGGGATTCATAAGAAAATACCTCGATCTATCGACGACTAAAACATTGCGTTATATAATTGATTTTGGTATGATATGCTACATGTTTGTACTGGGATTGGAGATGGATCCATATGTACTCTTTAAAGCACCTGCGCGTGATGCTAAAGTAGCTTATGCTGGAATGCTTTCAACATTTATCTTAGCCTGTTCCATAATCCCGTTTTTCAGATACTCAAAAGTATCGGAGGTCAGTTTCACCCTCGCCCTCTCAATAGCTCTCTCCAGCACAGCTTCTCCTGTCCTCACCCGTTTGATCACCAGTCTCAAAATAGGCAAATCAGACATTGGCCGGCTTGTTATTGCTGCTGGAATGCATTCAGATTTTATAACGACTCTTCTGATCTGCATCGGTTATCTCTTTTGTCAATGTCAAGAGATAAGCATCAGCTTAAGCAAAGGATTTCAATTAAGTTGTGCGATATTGATCCAGACAGTTACCGCCGCGAAGGTTTCACCGATATTCATGAACTGGGTAAATAATGAAAATCCTGAGGGTAAACCTATGAAAGGTTCTCACCTAGTTCTCTCAGTTGCATTCATGGCCTTCCTTTGCTGCTGCCCTGCTCTATTTGGTTACAATCCAATTCTCAGTGCATTCATGGCCGGAACTTTTTTGCCTCGAGAAGGTAGAGTATCGAGATGGGCAATTGGAAAAATTAACTACTTGCTAACCATCATTTTCTATCCTATCTTCTTCTTTTGGATGGGGGTTGAATCCAAGTTAAGTGACTTTGAAGTTGGACATATAATGACATGGCTCAGGTTGATTCTGCTTTTTGCTATTGCAACAGTTGGAAAAGTTGCCGGTACTGTCATTGCTGGGGCGATTATGGGGTTCAATTGGCCTGAATCAGTAACACTTGGGTTGCTCTTAACTATGAAGGGCCATTTTCATATATACTTAGCCATTGCTGCAAAAACGGCTGGAAAGATAACCACATCTACGAGTACCGTGATGATAATTGTGATCTTCTTCACTATTGTGCATGCTCCAAAAGTTGTGGCACATATAATCAAAAGGGCAAGGAAACGCACACCTACGCATCGTATGGCACTCCAGTTGCTGGATCCATCAAGTGAGCTGAGGCTCTTGTTATGCATTCATGGACCTCAGAACATTTCAGCGGCTATTAACGTTATGGAGATCTCTCGGGGGACGGCTAACCCTGGAATTGTTGTATATGTCACTGACATGATTGAACTTACAGATGAAATAGCATCAACATTAGTGCAAGGTGAAGGAGTGGACACAGTGACTGTAACTCACAAAGGAGTGACACAGATGAGAGACCAAATCACCGGGGCAGTTCAAAGCTATGTAGATGAAAGTGGAGAAGGAATTACCCTCAGAAGAATGTTGGCTCTCTCAACATTCAATTGCATGTCTCAGGACATCTGCATTTTGGCAGAAGAATTGATGGGAGCTCTTATCATACTACCATTCCACAAGAGCCAACGTGGGGACGGGGCATTGGGTGAGGGCCACCCAGGCTTCCGCTATGTTAATCGTAAGGTTCTCAGGAATGCCCCCTGCTCTGTGGGAATCCTAGTAGATAGAGGTCTTGGATCAGTAGAGAAAATTTCAAGATCATATGCATCTCAGACTGTGGCAGTCATCTTCATCGGTGGTAAAGATGATAGAGAAGCACTAGCCTATGCTGGCCAAGTAGCAAGGCATCCAGGAGTTAAACTCACAGTGATAAGATTCTTGGTAGATGCAGACTCAGAAAATGCTTCAAGAAGAGCTGGCACTTACAGGATCAGCATAGAAGAGCAGGAAGAGGAAATGAGACAAGACGACGAATGCTTTGCTCATTTCTACGAACGATATGTCGCCGGGGGGCAAGTTGCGTATATGGAGAAACATCTGGCCAATTCTTCTGAGACATATTCTACTTTGAAATCACTGGAAGGGCAATATGCACTCATAATTGTTGGTCGAGGTGGGGGGATCAATTCAGTGTTAACTTTCGGGATGAACGACTGGCAACAGTGTCCGGAACTTGGTCCTATTGGGGATGTTCTTTCTGGGTCTGAATTCTCTGCTAGGACCTCAGTTTTGATCATCCAACAACACAATATAAAGGGAGAACTAGATGGACTTGATGATGACTTTTCTGTAATGTAG 2385 43.35 MARRRFREQQRSLAAADHSCTIRLTEIFGRATKHILGFFLMVGVCNAMHYLLRPFSQPRITSDTFVGLVMGNLGFIRKYLDLSTTKTLRYIIDFGMICYMFVLGLEMDPYVLFKAPARDAKVAYAGMLSTFILACSIIPFFRYSKVSEVSFTLALSIALSSTASPVLTRLITSLKIGKSDIGRLVIAAGMHSDFITTLLICIGYLFCQCQEISISLSKGFQLSCAILIQTVTAAKVSPIFMNWVNNENPEGKPMKGSHLVLSVAFMAFLCCCPALFGYNPILSAFMAGTFLPREGRVSRWAIGKINYLLTIIFYPIFFFWMGVESKLSDFEVGHIMTWLRLILLFAIATVGKVAGTVIAGAIMGFNWPESVTLGLLLTMKGHFHIYLAIAAKTAGKITTSTSTVMIIVIFFTIVHAPKVVAHIIKRARKRTPTHRMALQLLDPSSELRLLLCIHGPQNISAAINVMEISRGTANPGIVVYVTDMIELTDEIASTLVQGEGVDTVTVTHKGVTQMRDQITGAVQSYVDESGEGITLRRMLALSTFNCMSQDICILAEELMGALIILPFHKSQRGDGALGEGHPGFRYVNRKVLRNAPCSVGILVDRGLGSVEKISRSYASQTVAVIFIGGKDDREALAYAGQVARHPGVKLTVIRFLVDADSENASRRAGTYRISIEEQEEEMRQDDECFAHFYERYVAGGQVAYMEKHLANSSETYSTLKSLEGQYALIIVGRGGGINSVLTFGMNDWQQCPELGPIGDVLSGSEFSARTSVLIIQQHNIKGELDGLDDDFSVM 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8107414 8110856 - evm.model.ptg000015l.1209 HCH4g1209 543453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1209 794 Gene3D - 484 747 - -
HCH4g1209 794 FunFam Cation/H(+) antiporter 28 32 433 - -
HCH4g1209 794 Gene3D - 31 433 IPR038770 -
HCH4g1209 794 PANTHER CATION/H + ANTIPORTER 38 780 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
HCH4g1209 794 Pfam Sodium/hydrogen exchanger family 51 423 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1209 HCH-Chr4:8107414 HCH6g1235 HCH-Chr6:46736001 2.00E-86 dispersed
HCH4g1209 HCH-Chr4:8107414 HCH2g0250 HCH-Chr2:38301674 7.60E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1209 K26731 - csv:101211645 1319.68