Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1224 ATGGAGCTCGGTTTAACCCTCGGCGACACTCCTAGACCTTTCCGGTTCCCTGAAAAACACCCCAAACGCGTTTCCCCCAAAGATTTGGGTTTGGACTTTTCTGTGGATTTATCAATCGGCCGTCCGGTCACCGGAGAAAGAAAAGAAGAAGAAGATGAAGAATCCGATGAGAATGAAAGACACGCGCCGATTCAGCTTGATCTTCTTCCTCACAGTCCCGTCCCTCGTAACCTGACGAATCCTTACCTAGGATTCCCTTGGCCGCCGCAGCCGCCGCCATCTGAAAACGAAGAAGGAGAAGAGAGAGCGGGATCTCCAAACAGCGCAGCGTCGTCGTTTCAAATGGAATTCGGGTTGTACGGAACGAGGGGGAATAATTGTTTCCGTACAGATCAAATGGAGAATGGTGAATCAGAGAGAGGTTCATCTAGGGCTAGTGATGAAGACGAAAATGGTTCCACAAGGAAGAAACTTAGACTCTCTAAAGATCAATCTGCTTTTCTTGAAGAAAGTTTTAAAGAACACAATACCTTAAATCCTAAACAGAAACTGGCTTTAGCTAAGCAGCTTAATCTTCGTCCACGTCAAGTAGAAGTTTGGTTTCAAAATAGAAGAGCAAGGACAAAACTGAAGCAAACAGAAGTGGATTGTGAATATTTAAAGAGGTGTTGCGAGACATTAACAGAAGAAAATAGGAGGCTACTAAAAGAGTTACAAGAATTAAGAGCTTTGAAATCAACAAATTCACTCTATATGCAATTACCAGCCACAACACTCACTATGTGCCCTTCTTGTGAAAGAGTCACCCCCACTTCCGCCACCACCACTACATCCGCCGTCTCCTCCGCCGCTCCCGCCGGAGCAAACCCTCATTCCAAAAGTAGATCTTACCCATTTGCTCAAATGAAGACCCACCAGTCAACAACTTCATGA 933 45.44 MELGLTLGDTPRPFRFPEKHPKRVSPKDLGLDFSVDLSIGRPVTGERKEEEDEESDENERHAPIQLDLLPHSPVPRNLTNPYLGFPWPPQPPPSENEEGEERAGSPNSAASSFQMEFGLYGTRGNNCFRTDQMENGESERGSSRASDEDENGSTRKKLRLSKDQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLLKELQELRALKSTNSLYMQLPATTLTMCPSCERVTPTSATTTTSAVSSAAPAGANPHSKSRSYPFAQMKTHQSTTS 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8310070 8311331 - evm.model.ptg000015l.1224 HCH4g1224 543468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1224 310 Pfam Homeobox associated leucine zipper 211 245 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g1224 310 Pfam Homeodomain 155 209 IPR001356 GO:0003677(InterPro)
HCH4g1224 310 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 51 288 IPR050762 -
HCH4g1224 310 ProSitePatterns 'Homeobox' domain signature. 186 209 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH4g1224 310 MobiDBLite consensus disorder prediction 273 310 - -
HCH4g1224 310 CDD homeodomain 155 212 IPR001356 GO:0003677(InterPro)
HCH4g1224 310 MobiDBLite consensus disorder prediction 1 109 - -
HCH4g1224 310 Gene3D - 159 209 - -
HCH4g1224 310 SUPERFAMILY Homeodomain-like 144 212 IPR009057 -
HCH4g1224 310 MobiDBLite consensus disorder prediction 133 161 - -
HCH4g1224 310 FunFam Homeobox-leucine zipper protein 18 140 216 - -
HCH4g1224 310 MobiDBLite consensus disorder prediction 13 29 - -
HCH4g1224 310 Coils Coil 224 247 - -
HCH4g1224 310 ProSiteProfiles 'Homeobox' domain profile. 151 211 IPR001356 GO:0003677(InterPro)
HCH4g1224 310 MobiDBLite consensus disorder prediction 124 161 - -
HCH4g1224 310 SMART HOX_1 153 215 IPR001356 GO:0003677(InterPro)
HCH4g1224 310 SMART halz 211 254 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1224 HCH-Chr4:8310070 HCH6g1036 HCH-Chr6:45096222 3.80E-49 dispersed
HCH11g0554 HCH-Chr11:7771367 HCH4g1224 HCH-Chr4:8310070 3.20E-76 transposed
HCH4g1224 HCH-Chr4:8310070 HCH6g0326 HCH-Chr6:5047690 3.30E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33504 PF00046 Homeodomain 2.00E-15 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1224 K09338 - csv:101221600 393.275