Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1241 ATGGCCATGGAATCCAATGAAACAAGGGAGTTCATTTTCCGATCCAAGCTTCCAGATATCTCCATCCCAAATCACCTCCCTCTCCATGAATATATCTTCCAAAAGGAATCCGAAATCAGTTCCCGACCATGCCTAATCAACGGCGCCACTGGCGATATCTACACTTACGCCGACGTCCATCTCACATCCCGTCGAGTAGCTTCCGGTCTCCACAAACTCGGCATTCGTAAGGGTGACGTCATCATGAACTTACTCCCAAACTCCCCCGAATTCGTCTTCTCCTTCCTCGCCGCCTCCTACCGCGGCGCGATCATGACGGCCGCGAATCCATTCTACACGGCCGTGGAAATCGCGAAACAAGCCAAAGCTTCAAACGCGAAATTAATCATCACTCAAGCTTGTTTCTACGACCGTGTTAAAGATTTAGCTGACGATGATCGTGTTAAGATCGTGTGTACGGATTTTACTCCTGAAGGTTCTTTGCATTTCTCGATTTTAACTCAATCCGACGAAAACGACGTCCCGCCAGTGGAGATAAACTCCGAAGATGTGGTGGCGCTGCCGTATTCCTCCGGCACGACTGGATTACCGAAGGGAGTGATGTTATCGCATAAAGGATTAATAACGAGTGTGGCTCAGCAAATTGATGGAGAAAACCCTAATCTTTATTATCACAGAGAGGATGTGATTCTCTGCGTTTTGCCGTTCTTCCATATTTACTCTCTTAATTCGATATTACTATGTGGATTACGCGCTGGAGCTGCCATTTTGATAATGCAGAAATTTGATATTGTTTCGTTACTGCAATTAGTGGAGAAATATAAGGCTTCGATCATGCCGATTGTTCCACCCATTTTCTTAGCGATAGCGAAGTCGCCGGAACTTGAGAAATATGATCTTTCTTCCGTTAGGGTTTTGAAATCCGGTGGAGCTCCAATTGGAAAGGAGCTTATAGATACCGTCAGAGACAAGTTTCCTAAAGCTGTTCTCGGCCAGGGATATGGAATGACAGAAGCTGGTCCGGTTTTATCAATGAGTTTATCATTTGCAAAGCAATCTTTCCAAGTTAAACCAGGAGCTTGCGGGACTGTCGTCCGCAATGCAGAGATGAAGATCGTCGATCCTGAAACCGGCGCTTCCCTTCCGGCAAATTCCCCTGGAGAAATCTGCATCAGAGGAGACCAAATCATGAAGGGTTATCTAAATGATCCTGAATCCACGAAAAGAACCATTGACAAGGAAGGCTGGCTCCACACCGGTGACATCGGCCTTATCGATGCCGATGACGAGCTTTTCATCGTCGATCGATTGAAGGAGCTGATCAAATTCAAGGCATTTCAAGTGGCACCGGCGGAGCTCGAAGCCCTTCTCATCACACACCCCAAAATCTCTGACGGGGCTGTAATTGGTATGGCGGATGAGGCGGCCGGAGAGGTGCCGGTGGCGTTTGTGACAAAGGCTAACGGCGGAACCCTAACGGAGGATGACGTGAAGCAATTCATATCGAAACAAGTGGTGTTTTACAAGAGGCTAAAGAGGGTGTTCTTTGTGAACTCCATTCCTAAGGCGCCATCTGGCAAGATTCTGAGGAAAGAACTCAGAGCTCAACTTGCCTCTGGAATTTATAATTAA 1632 47.12 MAMESNETREFIFRSKLPDISIPNHLPLHEYIFQKESEISSRPCLINGATGDIYTYADVHLTSRRVASGLHKLGIRKGDVIMNLLPNSPEFVFSFLAASYRGAIMTAANPFYTAVEIAKQAKASNAKLIITQACFYDRVKDLADDDRVKIVCTDFTPEGSLHFSILTQSDENDVPPVEINSEDVVALPYSSGTTGLPKGVMLSHKGLITSVAQQIDGENPNLYYHREDVILCVLPFFHIYSLNSILLCGLRAGAAILIMQKFDIVSLLQLVEKYKASIMPIVPPIFLAIAKSPELEKYDLSSVRVLKSGGAPIGKELIDTVRDKFPKAVLGQGYGMTEAGPVLSMSLSFAKQSFQVKPGACGTVVRNAEMKIVDPETGASLPANSPGEICIRGDQIMKGYLNDPESTKRTIDKEGWLHTGDIGLIDADDELFIVDRLKELIKFKAFQVAPAELEALLITHPKISDGAVIGMADEAAGEVPVAFVTKANGGTLTEDDVKQFISKQVVFYKRLKRVFFVNSIPKAPSGKILRKELRAQLASGIYN 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8472513 8474596 - evm.model.ptg000015l.1241 HCH4g1241 543485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1241 543 Gene3D - 438 540 IPR045851 -
HCH4g1241 543 CDD 4CL 22 533 - -
HCH4g1241 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 438 - -
HCH4g1241 543 Pfam AMP-binding enzyme 42 401 IPR000873 -
HCH4g1241 543 SUPERFAMILY Acetyl-CoA synthetase-like 11 540 - -
HCH4g1241 543 Gene3D - 3 437 IPR042099 -
HCH4g1241 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 534 - GO:0016405(PANTHER)
HCH4g1241 543 FunFam 4-coumarate--CoA ligase 2 439 540 - -
HCH4g1241 543 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
HCH4g1241 543 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1241 HCH-Chr4:8472513 HCH8g1024 HCH-Chr8:46243694 1.10E-213 dispersed
HCH4g1241 HCH-Chr4:8472513 HCH4g1242 HCH-Chr4:8480249 1.00E-307 tandem
HCH4g1241 HCH-Chr4:8472513 HCH6g0312 HCH-Chr6:4851461 7.70E-231 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1241 K01904 - csv:101218121 913.294