Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1249 ATGGCGAAAATCTCATCTCCAAAACACAAGAATTCTTCCACTTCTGATACCCAGTTTATTCCTCGCCATGAAAGGAAGGTTCTCAAACGGACAAGGAAAACTGTTCCTCGTGATGTTCCAGCTCAGCGTAGCTCTGTCTTCCGCGGTGTCACTAGGCATAGATGGACGGGGAGATACGAGGCGCATTTGTGGGATAAGAATTGCTGGAATGAAGGGCAGAATAAGAAAGGAAGACAAGGAGCTTATGATGATGAAGAAGCAGCAGCTCATGCTTATGATTTGGCAGCGCTCAAATACTGGGGAATTGAAACTGTTCTTAACTTTCCATTATTGACGTACCAAGATGATCTCAAAGAAATGGAAGGTCAAACAAGAGAAGAGTACATTGGATATTTAAGAAGGAAAAGTAGCGGATTTTCTCGTGGGGTGTCGAAGTATAGAGGCGTAGCCAGGCACCATCATAATGGAAGATGGGAGGCTCGAATCGGCAGAGTATTTGGTAACAAATATCTTTACTTGGGAACATATGCTACTCAAGAAGAAGCTGCCGCAGCTTATGACATGGCAGCCATCGAGTACCGTGGCCTTAACGCCGTTACCAACTTTGACCTAAGCCGTTACGTCACTTGCTTACGTCCTCCTAGTGAAGAGAATATCCCTAACGATCCTAACGACCTTACACCAAACCCGAACGGCGAAGCCAATTCAGAATCAAACCCTAATTCCATGCTAGGGTTAGGATTTACCTTCCCGTCTCAATGTTCGAGTTCTGGCCAAACCGTCGAGCCGCTACCGGCATCTTCCTCAGGTGACTCCTCGTCGCCGGCATTGGGGCTCTTACTCCAGTCTTCGAAATTTAAAGATATGGTGGAGAGATCGACGTCGGCAGCGGAGGCTCCGGAGACGCCCCCGGAGTCGGACCGGCCTCGACGATGCTTCCCTGATGATATTCAAACTTACTTCGACTGCACTCAAGACTCCGGTAGCTTTGCCGAAAGCGATGACGGCATTTTCGGGTACCTGAACTCGTTTCCTTCATCAATATTTCACTGTGAACTGGATGCTTAA 1068 47.66 MAKISSPKHKNSSTSDTQFIPRHERKVLKRTRKTVPRDVPAQRSSVFRGVTRHRWTGRYEAHLWDKNCWNEGQNKKGRQGAYDDEEAAAHAYDLAALKYWGIETVLNFPLLTYQDDLKEMEGQTREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDMAAIEYRGLNAVTNFDLSRYVTCLRPPSEENIPNDPNDLTPNPNGEANSESNPNSMLGLGFTFPSQCSSSGQTVEPLPASSSGDSSSPALGLLLQSSKFKDMVERSTSAAEAPETPPESDRPRRCFPDDIQTYFDCTQDSGSFAESDDGIFGYLNSFPSSIFHCELDA 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8567549 8570992 + evm.model.ptg000015l.1249 HCH4g1249 543493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1249 355 MobiDBLite consensus disorder prediction 290 312 - -
HCH4g1249 355 SUPERFAMILY DNA-binding domain 45 110 IPR016177 GO:0003677(InterPro)
HCH4g1249 355 Pfam AP2 domain 144 195 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1249 355 ProSiteProfiles AP2/ERF domain profile. 145 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1249 355 Gene3D AP2/ERF domain 46 111 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1249 355 Gene3D AP2/ERF domain 144 205 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1249 355 FunFam AP2-like ethylene-responsive transcription factor 144 205 - -
HCH4g1249 355 PRINTS Ethylene responsive element binding protein signature 185 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1249 355 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1249 355 MobiDBLite consensus disorder prediction 1 18 - -
HCH4g1249 355 ProSiteProfiles AP2/ERF domain profile. 46 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1249 355 MobiDBLite consensus disorder prediction 1 20 - -
HCH4g1249 355 FunFam AP2-like ethylene-responsive transcription factor 45 111 - -
HCH4g1249 355 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 33 231 - -
HCH4g1249 355 CDD AP2 144 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1249 355 MobiDBLite consensus disorder prediction 213 275 - -
HCH4g1249 355 SMART rav1_2 46 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1249 355 SMART rav1_2 145 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1249 355 SUPERFAMILY DNA-binding domain 144 205 IPR016177 GO:0003677(InterPro)
HCH4g1249 355 MobiDBLite consensus disorder prediction 220 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1249 HCH-Chr4:8567549 HCH8g0965 HCH-Chr8:45789040 1.60E-112 dispersed
HCH4g1249 HCH-Chr4:8567549 HCH9g0209 HCH-Chr9:1233045 1.80E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33506 PF00847 AP2 4.70E-09 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1249 K09285 - csv:101206499 531.176