Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1250 ATGATTTCTGTTAAGAAAACGATAGTACCACGGCAAGCTTCATACAATTCTCTTTACATTAATCCCCTCAATGACCTCAAGCACAACCGTAGCTGTAGTGAAGGCGGGCGGTTGATGGCCAATGCCGATGCAATCGACGACCGATTCCGACAAAACAAAGAAAACTTGACGCCCAACACCAGGGATAAATGTAAGAGTGAGGAAGATGCTGTGTTTGGGGATAAAGAAAATGCAATTTCCGTAAATGGGTCTTGTTTGAACTCCAACAAGTGTGGAAATTTCAAGTCTTTTTCAACTGGGAGGGCGTTGAAACCGTCCTCGCTTCAACTTTGTATGCAGATCAATGAGCCTGATAAGGTTTTCGCTTCTAAATTGTGGGATGCTACTGATTCTGAACACTCAAGCTCGTTGAAGATTTGGGATTTTTCGGATTCGGATGCTGCTCCTGCTTCCTCTTGGTCGACATTGCCTAATAGGTCTTTATTATGTAGACCATTGCCAGTGGATGTGGGGAGATGCACCTGTGTCATCGTGAAGGAAAAGTCACCAGAAGGGCTTCATGGCGGTGCCTTTTATTCTTTATACACCAATGAAGGAAAGGGACGACAGGATAGGAAACTAGCCGTAGCACACCATAAACGGCTCAATGGGAGGTCGGGATATAACATAGCTCAGAGCACAAGAGGGATTTTGTCTAATGCAGATGAGAGTTTTGTTGGATCCATGACAACAAACCTCGTCGGTTCGAAATATCATATATGGGATCAGGGGAGCCGTCTTAAATCTATTGCCAGCAAGTCTAAATCACTTCTGGCTGTTGTAACATTCACGCCTACGGTAACAACCTGGACGGGTAATCATAGAAGTATGAAAGCTTACATCCCCAAGCATCAATCAATGCTGCTCAAGAATACCAATCAGTTACAGCACATAGCAGGACTACCAAGGGAGTGGGAAGAACGAAAAGACAAAGTTCACCAGCTTTTTTCTAAAGTTCCTCAATACAACAAGATTTCTAGGCAGTATGAATTGGACTTCAGAGACAGAGGAAAGGCAGTTTCAGGTCTCATGATTCAATCCTCTGTGAAGAATTTTCAGTTAAAATTAGAGGAAAATGGAAAGCAAACAATACTCCAACTTGGAAGGATTGGGAAGTCCAAGTATGTGATGGATTACAGATATCCTTTGACAGGTTATCAAGCATTTTGCATCTGCCTGGCTTCCATAGATTCCAAGCTTTGTTGCTCTGTATAA 1254 42.98 MISVKKTIVPRQASYNSLYINPLNDLKHNRSCSEGGRLMANADAIDDRFRQNKENLTPNTRDKCKSEEDAVFGDKENAISVNGSCLNSNKCGNFKSFSTGRALKPSSLQLCMQINEPDKVFASKLWDATDSEHSSSLKIWDFSDSDAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPEGLHGGAFYSLYTNEGKGRQDRKLAVAHHKRLNGRSGYNIAQSTRGILSNADESFVGSMTTNLVGSKYHIWDQGSRLKSIASKSKSLLAVVTFTPTVTTWTGNHRSMKAYIPKHQSMLLKNTNQLQHIAGLPREWEERKDKVHQLFSKVPQYNKISRQYELDFRDRGKAVSGLMIQSSVKNFQLKLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8572864 8575710 - evm.model.ptg000015l.1250 HCH4g1250 543494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1250 417 PRINTS Tubby superfamily signature 394 416 IPR000007 -
HCH4g1250 417 PRINTS Tubby superfamily signature 238 262 IPR000007 -
HCH4g1250 417 PRINTS Tubby superfamily signature 373 392 IPR000007 -
HCH4g1250 417 PRINTS Tubby superfamily signature 353 369 IPR000007 -
HCH4g1250 417 PANTHER TUBBY-RELATED 43 415 - -
HCH4g1250 417 Gene3D Tubby Protein; Chain A 155 416 IPR025659 -
HCH4g1250 417 Pfam Tub family 162 411 IPR000007 -
HCH4g1250 417 SUPERFAMILY Tubby C-terminal domain-like 150 415 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1250 HCH-Chr4:8572864 HCH7g1132 HCH-Chr7:44085791 1.60E-10 dispersed
HCH4g1250 HCH-Chr4:8572864 HCH13g0234 HCH-Chr13:1539533 1.10E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33507 PF01167 Tub 1.80E-43 CL0395 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1250 K19600 - csv:101216780 661.759