Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1250 ATGATTTCTGTTAAGAAAACGATAGTACCACGGCAAGCTTCATACAATTCTCTTTACATTAATCCCCTCAATGACCTCAAGCACAACCGTAGCTGTAGTGAAGGCGGGCGGTTGATGGCCAATGCCGATGCAATCGACGACCGATTCCGACAAAACAAAGAAAACTTGACGCCCAACACCAGGGATAAATGTAAGAGTGAGGAAGATGCTGTGTTTGGGGATAAAGAAAATGCAATTTCCGTAAATGGGTCTTGTTTGAACTCCAACAAGTGTGGAAATTTCAAGTCTTTTTCAACTGGGAGGGCGTTGAAACCGTCCTCGCTTCAACTTTGTATGCAGATCAATGAGCCTGATAAGGTTTTCGCTTCTAAATTGTGGGATGCTACTGATTCTGAACACTCAAGCTCGTTGAAGATTTGGGATTTTTCGGATTCGGATGCTGCTCCTGCTTCCTCTTGGTCGACATTGCCTAATAGGTCTTTATTATGTAGACCATTGCCAGTGGATGTGGGGAGATGCACCTGTGTCATCGTGAAGGAAAAGTCACCAGAAGGGCTTCATGGCGGTGCCTTTTATTCTTTATACACCAATGAAGGAAAGGGACGACAGGATAGGAAACTAGCCGTAGCACACCATAAACGGCTCAATGGGAGGTCGGGATATAACATAGCTCAGAGCACAAGAGGGATTTTGTCTAATGCAGATGAGAGTTTTGTTGGATCCATGACAACAAACCTCGTCGGTTCGAAATATCATATATGGGATCAGGGGAGCCGTCTTAAATCTATTGCCAGCAAGTCTAAATCACTTCTGGCTGTTGTAACATTCACGCCTACGGTAACAACCTGGACGGGTAATCATAGAAGTATGAAAGCTTACATCCCCAAGCATCAATCAATGCTGCTCAAGAATACCAATCAGTTACAGCACATAGCAGGACTACCAAGGGAGTGGGAAGAACGAAAAGACAAAGTTCACCAGCTTTTTTCTAAAGTTCCTCAATACAACAAGATTTCTAGGCAGTATGAATTGGACTTCAGAGACAGAGGAAAGGCAGTTTCAGGTCTCATGATTCAATCCTCTGTGAAGAATTTTCAGTTAAAATTAGAGGAAAATGGAAAGCAAACAATACTCCAACTTGGAAGGATTGGGAAGTCCAAGTATGTGATGGATTACAGATATCCTTTGACAGGTTATCAAGCATTTTGCATCTGCCTGGCTTCCATAGATTCCAAGCTTTGTTGCTCTGTATAA 1254 42.98 MISVKKTIVPRQASYNSLYINPLNDLKHNRSCSEGGRLMANADAIDDRFRQNKENLTPNTRDKCKSEEDAVFGDKENAISVNGSCLNSNKCGNFKSFSTGRALKPSSLQLCMQINEPDKVFASKLWDATDSEHSSSLKIWDFSDSDAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPEGLHGGAFYSLYTNEGKGRQDRKLAVAHHKRLNGRSGYNIAQSTRGILSNADESFVGSMTTNLVGSKYHIWDQGSRLKSIASKSKSLLAVVTFTPTVTTWTGNHRSMKAYIPKHQSMLLKNTNQLQHIAGLPREWEERKDKVHQLFSKVPQYNKISRQYELDFRDRGKAVSGLMIQSSVKNFQLKLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8572864 8575710 - evm.model.ptg000015l.1250 HCH4g1250 543494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1250 417 PRINTS Tubby superfamily signature 394 416 IPR000007 -
HCH4g1250 417 PRINTS Tubby superfamily signature 238 262 IPR000007 -
HCH4g1250 417 PRINTS Tubby superfamily signature 373 392 IPR000007 -
HCH4g1250 417 PRINTS Tubby superfamily signature 353 369 IPR000007 -
HCH4g1250 417 PANTHER TUBBY-RELATED 43 415 - -
HCH4g1250 417 Gene3D Tubby Protein; Chain A 155 416 IPR025659 -
HCH4g1250 417 Pfam Tub family 162 411 IPR000007 -
HCH4g1250 417 SUPERFAMILY Tubby C-terminal domain-like 150 415 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1250 K19600 - - csv:101216780 661.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1250 HCH-Chr4:8572864 HCH7g1132 HCH-Chr7:44085791 1.60E-10 dispersed
HCH4g1250 HCH-Chr4:8572864 HCH13g0234 HCH-Chr13:1539533 1.10E-11 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH12g1446 . 1 431 TUB Transcription Factor Family AT1G76900 72.5 3.3e-174 608.2
HCH11g0876 . 1 426 TUB Transcription Factor Family AT1G76900 69.9 3.2e-169 591.7
HCH13g0234 . 1 430 TUB Transcription Factor Family AT1G76900 72.1 3.2e-169 591.7
HCH6g1661 . 13 387 TUB Transcription Factor Family AT1G76900 50.5 5.5e-113 404.8
HCH11g0876 . 173 426 TUB Transcription Factor Family AT1G25280 73.5 5.9e-99 357.5
HCH12g1446 . 173 431 TUB Transcription Factor Family AT1G25280 68.8 8.9e-95 343.6
HCH13g0234 . 175 430 TUB Transcription Factor Family AT1G25280 67.8 9.5e-89 323.6
HCH6g1661 . 154 387 TUB Transcription Factor Family AT1G25280 53.6 3.7e-69 258.5
HCH7g1132 . 158 395 TUB Transcription Factor Family AT1G25280 52.2 1.9e-68 256.1
HCH12g0183 . 188 422 TUB Transcription Factor Family AT1G25280 55.5 5.4e-68 254.6
HCH6g1661 . 98 387 TUB Transcription Factor Family AT5G18680 61.8 3.9e-99 358.2
HCH7g1132 . 100 395 TUB Transcription Factor Family AT5G18680 61.5 9.9e-95 343.6
HCH12g1446 . 112 431 TUB Transcription Factor Family AT5G18680 53.1 2.4e-85 312.4
HCH13g0234 . 112 430 TUB Transcription Factor Family AT5G18680 52.8 2.3e-83 305.8
HCH11g0876 . 112 426 TUB Transcription Factor Family AT5G18680 53.0 6.6e-83 304.3
HCH12g0183 . 125 422 TUB Transcription Factor Family AT5G18680 50.3 9.3e-77 283.9
HCH12g0183 . 1 422 TUB Transcription Factor Family AT2G18280 57.2 1.4e-125 446.4
HCH11g0876 . 1 426 TUB Transcription Factor Family AT2G18280 53.1 2.9e-118 422.2
HCH12g1446 . 1 431 TUB Transcription Factor Family AT2G18280 52.9 7.9e-116 414.1
HCH13g0234 . 1 430 TUB Transcription Factor Family AT2G18280 51.3 1.9e-114 409.5
HCH6g1661 . 1 387 TUB Transcription Factor Family AT2G18280 52.1 1.1e-112 403.7
HCH7g1132 . 1 395 TUB Transcription Factor Family AT2G18280 52.2 1.5e-111 399.8
HCH6g0633 . 47 379 TUB Transcription Factor Family AT2G18280 50.6 8.5e-94 340.9
HCH6g1661 . 1 387 TUB Transcription Factor Family AT2G47900 68.2 3.6e-164 574.7
HCH7g1132 . 1 395 TUB Transcription Factor Family AT2G47900 66.4 2.1e-156 548.9
HCH12g1446 . 1 431 TUB Transcription Factor Family AT2G47900 56.0 6.6e-134 474.2
HCH11g0876 . 1 426 TUB Transcription Factor Family AT2G47900 56.9 7.3e-133 470.7
HCH13g0234 . 1 430 TUB Transcription Factor Family AT2G47900 56.9 1.4e-131 466.5
HCH12g0183 . 1 422 TUB Transcription Factor Family AT2G47900 53.5 6.7e-118 421.0
HCH6g0633 . 47 379 TUB Transcription Factor Family AT2G47900 51.1 3.7e-100 362.1
HCH4g1250 . 93 308 TUB Transcription Factor Family AT1G16070 64.1 7.7e-76 280.8
HCH11g0876 . 65 426 TUB Transcription Factor Family AT1G43640 68.7 6.1e-147 517.3
HCH12g1446 . 67 431 TUB Transcription Factor Family AT1G43640 69.5 1.0e-146 516.5
HCH13g0234 . 65 430 TUB Transcription Factor Family AT1G43640 68.6 1.1e-143 506.5
HCH7g1132 . 51 395 TUB Transcription Factor Family AT1G43640 53.7 2.0e-105 379.4
HCH6g1661 . 47 387 TUB Transcription Factor Family AT1G43640 51.8 2.6e-105 379.0
HCH12g0183 . 31 422 TUB Transcription Factor Family AT1G47270 59.1 4.7e-129 458.0
HCH11g0876 . 1 426 TUB Transcription Factor Family AT1G47270 53.0 5.9e-116 414.5
HCH13g0234 . 48 430 TUB Transcription Factor Family AT1G47270 55.3 3.3e-114 408.7
HCH12g1446 . 30 431 TUB Transcription Factor Family AT1G47270 52.1 4.4e-111 398.3
HCH7g1132 . 1 395 TUB Transcription Factor Family AT1G47270 51.7 3.6e-105 378.6
HCH6g0633 . 45 379 TUB Transcription Factor Family AT1G53320 79.8 1.1e-159 559.7
HCH7g1132 . 35 395 TUB Transcription Factor Family AT1G53320 50.8 4.2e-98 355.1
HCH12g0183 . 64 422 TUB Transcription Factor Family AT1G53320 51.3 3.3e-95 345.5
HCH6g1661 . 98 387 TUB Transcription Factor Family AT3G06380 62.8 2.1e-97 352.4
HCH7g1132 . 100 395 TUB Transcription Factor Family AT3G06380 63.0 1.6e-94 342.8
HCH11g0876 . 116 426 TUB Transcription Factor Family AT3G06380 54.3 3.8e-83 305.1
HCH12g1446 . 116 431 TUB Transcription Factor Family AT3G06380 52.1 8.7e-80 293.9
HCH13g0234 . 116 430 TUB Transcription Factor Family AT3G06380 51.7 1.1e-79 293.5
HCH12g0183 . 129 422 TUB Transcription Factor Family AT3G06380 53.1 3.1e-77 285.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011488 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33507 PF01167 Tub 1.80E-43 CL0395 HCH TF