Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1257 ATGATAATCAACGTGAAAGATTCAACGATGGTGAAACCGGCGGAGGAAACGCCGCGCCGGAGTCTATGGAACTCGAACGTCGACCTAGTAGTTCCTAGCATGCACACTCCGAGCGTATACTTTTACCGGCCAACTGGGTCTCCGGATTTCTTCAAGAGTGAAGTCCTGAAGGAAGGATTAAGCAAAGCTCTGGTGCCGTTTTATCCGATGGCCGGACGGTTAAAGCGCGATGAAGATGGAAGAATCGAGATCGATTGTAATGCGGAAGGTGTGCTTCTTGTGGAGGCTGAGACGACGGCTGTTATCGATGATTTTGGAGATTTCGCGCCGACGTTGCAGCTCCGGCAACTTATTCCGATGGTGGATTACTCCGGTGGAATTGAATCATATCCGCTGTTGGTTTTACAGGTCACATACTTCAAATGCGGCGGCGTTTCCCTTGGCGTTGGAATGCAGCACCATGCAGCCGACGGATTCTCCGGCCTCCATTTTGTAAACACATGGTCTGACATGTCTCGCGGTCTCGACCTCAAGTTGCAGCCGTTTATCGACCGGACCCTCCTCCGTGCCAAGGATCCGCCTCAGCCCGTCTTTCGCCACATTGAATACCAGCCTGCTCCCCCTATGAAATCTCCACTTCCACCATCCCCCGATGGCGGCACCACTGTCTCCATCTTCAAAGTCACCCGAGATCAGCTCAATTTACTGAAAGCCAAATGCAAGGAGAATGGTAACACGATCAACTACAGCTCCTACGAGATGTTATCAGGCCATGTATGGAGATCCACATGTAAAGCACGTGGACTCCCTGACGATCAAGACACCAAGTTATATATAGCTACCGACGGGCGGTCCCGATTGCGTCCACCACTCCCGAACGGCTACTTCGGCAACGTGATATTCACAGCGACACCCATCGCTGTCGCAGGCGATCTCATGTCAAATCCGACATGGTACGCGGCAAGCAAGATTCATGATGCATTGGTGAGAATGGACAACGATTACTTGAGATCAGCTCTTGACTACCTAGAGATTCAACCTGATATATCAGCTCTAGTTCGTGGGGCTCATACATTCAAATGTCCAAACCTCGGGATCACAAGCTGGGTTAGACTGCCAATCCATGATGCTGATTTTGGGTGGGGGAGGCCAATATTCATGGGGCCTGGTGGAATTGCTTATGAAGGGTTATCATTTATAATTCCAAGTGCTTCTAGCGATGGGAGCTTGTCTGTGGCCATTTCATTGCAGACCCATCATATGAAAGTGTTTGAGAAGTTGTTGTATGATATTTGA 1296 49.92 MIINVKDSTMVKPAEETPRRSLWNSNVDLVVPSMHTPSVYFYRPTGSPDFFKSEVLKEGLSKALVPFYPMAGRLKRDEDGRIEIDCNAEGVLLVEAETTAVIDDFGDFAPTLQLRQLIPMVDYSGGIESYPLLVLQVTYFKCGGVSLGVGMQHHAADGFSGLHFVNTWSDMSRGLDLKLQPFIDRTLLRAKDPPQPVFRHIEYQPAPPMKSPLPPSPDGGTTVSIFKVTRDQLNLLKAKCKENGNTINYSSYEMLSGHVWRSTCKARGLPDDQDTKLYIATDGRSRLRPPLPNGYFGNVIFTATPIAVAGDLMSNPTWYAASKIHDALVRMDNDYLRSALDYLEIQPDISALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSASSDGSLSVAISLQTHHMKVFEKLLYDI 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8611669 8615371 - evm.model.ptg000015l.1257 HCH4g1257 543501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1257 431 FunFam Spermidine hydroxycinnamoyl transferase 1 203 - -
HCH4g1257 431 Gene3D - 218 431 IPR023213 -
HCH4g1257 431 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 422 IPR050317 GO:0016747(PANTHER)
HCH4g1257 431 Pfam Transferase family 3 427 - -
HCH4g1257 431 Gene3D - 1 205 IPR023213 -
HCH4g1257 431 FunFam Tryptamine hydroxycinnamoyl transferase 213 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1257 HCH-Chr4:8611669 HCH9g0899 HCH-Chr9:6551765 4.60E-77 dispersed
HCH4g1257 HCH-Chr4:8611669 HCH12g0170 HCH-Chr12:910788 2.00E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1257 K13065 - csv:101214857 787.334