Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g1258 | ATGGGAATATATCTGAGCTCCCCTAAAACAGAAAAGTCCTCGGAAGATGGTGAGAGTGACAAACTTCGATATGGCCTATCTTCAATGCAAGGGTGGCGTGCCACCATGGAAGATGCTCATGCAGCCTATCCAGAGCTGGACAGATGCACATCTTTCTTTGGTGTCTATGATGGCCATGGAGGTAAAGCAGTTTCTAAGTTCTGTGCCAAGTTTCTTCACCGGCAGGTGCTCAAGCAGGAATCGTATATGGCTGGAGATTTGGGCAATTCAGTACAGAAGGCCTTTCTCAGAATGGATGAGATGATGCGTGGACAAAGAGGATGGAGGGAATTAGCCATATTGGGAGACAAAATGGACAAGATTTCTGGTATGATAGAAGGGCTTATATGGTCGCCTAGGAATAGTGAAGCTAACAACCATGTGGATGATTGGCCTCTGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCTTGTGTTGCAATCATCCGAAATAACCAACTTGTAGTGGCAAATGCTGGTGATTCACGTTGTGTCATATCGAGAAATGGTCAGGCATATAATTTATCTAAAGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGGATTTTGAAAGCTGGTGGCTTCATTCGAGTAGGTCGTGTCAATGGAAGTCTCAACTTGGCACGAGCAATAGGAGACATAGAATTCAAGCAGAACAAAAATTTACCTGCAGAAAAGCAGATAGTAACTGCCTATCCAGATGTTACTACTGTTGAGCTTTGTGAGGACGACGAGTTTCTTGTTCTTGCTTGTGATGGGATCTGGGATTGCATGTCCAGCCAGCAACTGGTCGACTACATAAGAGAGCAATTAAAAATGGAAAGTAAACTCTCGGTTGTTTGCGAGAGGGTGTTCGATAGGTGTTTGGCACCATCAGCTGGTGGCGAAGGATGTGACAACATGACTATGATATTGATTCAATTTAAGAAACCTTTTAACTCAAATGCATCTGCTGAGGAGCAGCCATCATCATCTAATCAACCGTTTGAACCGAAAGAAAGCTCTTCAAATACGGAATAG | 1080 | 44.26 | MGIYLSSPKTEKSSEDGESDKLRYGLSSMQGWRATMEDAHAAYPELDRCTSFFGVYDGHGGKAVSKFCAKFLHRQVLKQESYMAGDLGNSVQKAFLRMDEMMRGQRGWRELAILGDKMDKISGMIEGLIWSPRNSEANNHVDDWPLEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRNGQAYNLSKDHKPDLEVEKDRILKAGGFIRVGRVNGSLNLARAIGDIEFKQNKNLPAEKQIVTAYPDVTTVELCEDDEFLVLACDGIWDCMSSQQLVDYIREQLKMESKLSVVCERVFDRCLAPSAGGEGCDNMTMILIQFKKPFNSNASAEEQPSSSNQPFEPKESSSNTE | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 8649790 | 8655555 | + | evm.model.ptg000015l.1258 | HCH4g1258 | 543502 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g1258 | 359 | Pfam | Protein phosphatase 2C | 155 | 313 | IPR001932 | - | |
| HCH4g1258 | 359 | Pfam | Protein phosphatase 2C | 23 | 104 | IPR001932 | - | |
| HCH4g1258 | 359 | SMART | PP2C_SIG_2 | 28 | 328 | IPR001932 | - | |
| HCH4g1258 | 359 | CDD | PP2Cc | 23 | 328 | IPR001932 | - | |
| HCH4g1258 | 359 | Gene3D | - | 1 | 329 | IPR036457 | - | |
| HCH4g1258 | 359 | ProSitePatterns | PPM-type phosphatase domain signature. | 52 | 60 | IPR000222 | GO:0043169(InterPro) | |
| HCH4g1258 | 359 | MobiDBLite | consensus disorder prediction | 334 | 359 | - | - | |
| HCH4g1258 | 359 | SMART | PP2C_4 | 13 | 326 | IPR001932 | - | |
| HCH4g1258 | 359 | PANTHER | PROTEIN PHOSPHATASE 2C | 18 | 329 | IPR015655 | GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER) | |
| HCH4g1258 | 359 | SUPERFAMILY | PP2C-like | 3 | 330 | IPR036457 | - | |
| HCH4g1258 | 359 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| HCH4g1258 | 359 | ProSiteProfiles | PPM-type phosphatase domain profile. | 23 | 328 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH4g1258 | HCH-Chr4:8649790 | HCH6g1774 | HCH-Chr6:50127475 | 3.30E-28 | dispersed | |
| HCH10g0343 | HCH-Chr10:2772309 | HCH4g1258 | HCH-Chr4:8649790 | 2.50E-34 | transposed | |
| HCH4g1111 | HCH-Chr4:7273095 | HCH4g1258 | HCH-Chr4:8649790 | 2.30E-32 | transposed | |
| HCH12g0426 | HCH-Chr12:2465023 | HCH4g1258 | HCH-Chr4:8649790 | 5.30E-167 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH4g1258 | K17499 | - | csv:101214132 | 641.343 |