Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g1266 | ATGCCATTCGACGGCGACGGTTCTTCACCTTCCGTCCAAACTGTCTGCGTCACCGGCGCCGGCGGCTTCATTGCTTCTTGGATTGTCAAAATTCTCCTCGAAAAGGGCTATGTTGTTCGAGGAACTGTGAGAAATCCAGATGATCCGAAGAATGGTCATTTGAGAGAGCTTGAAGGTGCGGCGGAGAGGCTAACGTTACACAAAGCTGATCTTCTTGATTACGAAAGCCTGAGAGCGGCCATCAATGGCTGCGACGGCGTTTTCCATACGGCGTCGCCGGTGACTGATGATCCAGAGCAAATGGTGGAGCCAGCCGTGAAGGGGACCAAGAATGTTATAATCGCAGGGGCAGAGGCCAATGTTCGGCGCGTGGTGTTCACTTCATCGATCGGAGCCGTATATATGGACCCGAACCGAGGTCCAGATGAAGTTGTAGACGAGTCTTGTTGGAGTGATCTTGAGTTCTGCAAGAATACCAAGAATTGGTATTGCTATGGAAAAGCGGTGGCGGAGCAGGCGGCGTGGGAGGTGGCAAAGGAGAAGGGGGTGGGTTTAGTGGTGGTGAATCCGGTGTTGGTATTGGGGCCAGTGCTACAACCCATCATTAACGCAAGCATAATTCACATACTCAAGTATTTAACTGGCTCGGCTAAGACTTATGCCAATTCCGTACAGGCGTACGTGCACGTGAGGGATGTGGCTCTCGCTCATATTCTAGTCTACGAGACTCCCTCCGCCGCTGGCCGGTATCTCTGCGCCGAGAGTGTTCTCCACCGTGGAGAGGTCGTTGAGATTCTGGCCAAGTTCTTCCCAGAATATCCTGTTCCCACCAAGTGCTCAGATGAAGTGAACCCAAGGAAGAAGCCATATAACTTTTCCAACCAGAAGCTCAAGGATTTGGGGTTGGAGTTCACCCCTGTGAAGCAATGCCTCTATGAAACTGTTAAGAGCCTGCAAGAGAAGGGTCACCTTTCAATTCCTACTTCTACTCAGCAAGGACAAGGAGAATCCATTCGGATTCAATCCTAG | 1029 | 51.21 | MPFDGDGSSPSVQTVCVTGAGGFIASWIVKILLEKGYVVRGTVRNPDDPKNGHLRELEGAAERLTLHKADLLDYESLRAAINGCDGVFHTASPVTDDPEQMVEPAVKGTKNVIIAGAEANVRRVVFTSSIGAVYMDPNRGPDEVVDESCWSDLEFCKNTKNWYCYGKAVAEQAAWEVAKEKGVGLVVVNPVLVLGPVLQPIINASIIHILKYLTGSAKTYANSVQAYVHVRDVALAHILVYETPSAAGRYLCAESVLHRGEVVEILAKFFPEYPVPTKCSDEVNPRKKPYNFSNQKLKDLGLEFTPVKQCLYETVKSLQEKGHLSIPTSTQQGQGESIRIQS | 342 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 8712495 | 8716672 | - | evm.model.ptg000015l.1266 | HCH4g1266 | 543510 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g1266 | 342 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 14 | 317 | IPR050425 | GO:0016616(PANTHER) | |
| HCH4g1266 | 342 | Pfam | NAD dependent epimerase/dehydratase family | 15 | 247 | IPR001509 | - | |
| HCH4g1266 | 342 | FunFam | Cinnamoyl-CoA reductase 1 | 6 | 337 | - | - | |
| HCH4g1266 | 342 | Gene3D | - | 6 | 339 | - | - | |
| HCH4g1266 | 342 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 13 | 319 | IPR036291 | - | |
| HCH4g1266 | 342 | CDD | FR_SDR_e | 15 | 302 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH2g1363 | HCH-Chr2:55505864 | HCH4g1266 | HCH-Chr4:8712495 | 3.70E-79 | dispersed | |
| HCH4g1266 | HCH-Chr4:8712495 | HCH6g0289 | HCH-Chr6:4083619 | 4.00E-148 | dispersed | |
| HCH11g0777 | HCH-Chr11:37447691 | HCH4g1266 | HCH-Chr4:8712495 | 2.40E-65 | transposed | |
| HCH12g0026 | HCH-Chr12:172021 | HCH4g1266 | HCH-Chr4:8712495 | 4.60E-74 | transposed | |
| HCH12g0178 | HCH-Chr12:967218 | HCH4g1266 | HCH-Chr4:8712495 | 8.00E-47 | transposed | |
| HCH14g0073 | HCH-Chr14:11907086 | HCH4g1266 | HCH-Chr4:8712495 | 6.20E-42 | transposed | |
| HCH1g0778 | HCH-Chr1:56545215 | HCH4g1266 | HCH-Chr4:8712495 | 1.00E-65 | transposed | |
| HCH3g1469 | HCH-Chr3:52735243 | HCH4g1266 | HCH-Chr4:8712495 | 3.20E-70 | transposed | |
| HCH6g0725 | HCH-Chr6:40803152 | HCH4g1266 | HCH-Chr4:8712495 | 2.90E-45 | transposed | |
| HCH4g1266 | HCH-Chr4:8712495 | HCH6g0287 | HCH-Chr6:4062714 | 9.40E-150 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH4g1266 | K09753 | - | csv:101213412 | 583.563 |