Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1272 ATGGCTAGACCACAGCAGCGATATCGCGGTGTCCGGCAACGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCATCCTTTACTGAAGACGAGAATATGGCTCGGCACATTCGAGACGGCGGAAGACGCTGCCCGAGCTTATGACGAAGCGGCACGGCTGATGTGCGGCGCCAAAGCACGAACCAATTTCCAATACAACTCCAATGAGCCACCGTCGTCGTCGTCGGCGAAGCTTCTCTCTGCTTCACTGATAGCAAAACTCCACAAATGCCACTTAGCTTCCCTCCAAATAGCCAAGAAACACATCCAGAAACAGCCGGAAATTGAGCTGAATTACAATATGTACACGCCGCCGCAGCCCCATTACGGCATTGCCGAAAACAGCACCTCCCGGTGGCCGGAGGAGAGATGGGTTTACGCCGATGAGGGTCGAGCGGAGAGTAATAACCTGCAGCCACTTGAAGATGATCATATCGAGCAAATGATACAGGAGCTGCTTGATCTTGGTCCTGTTGAGCTCTGCCCAGTTCATGTTCAAATTTAA 543 52.67 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGAKARTNFQYNSNEPPSSSSAKLLSASLIAKLHKCHLASLQIAKKHIQKQPEIELNYNMYTPPQPHYGIAENSTSRWPEERWVYADEGRAESNNLQPLEDDHIEQMIQELLDLGPVELCPVHVQI 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8772694 8773323 + evm.model.ptg000015l.1272 HCH4g1272 543516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1272 180 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1272 180 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1272 180 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1272 180 CDD AP2 6 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1272 180 FunFam Ethylene-responsive transcription factor 2 6 65 - -
HCH4g1272 180 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677(InterPro)
HCH4g1272 180 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1272 180 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1272 180 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 96 IPR050913 -
HCH4g1272 180 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0462 HCH-Chr4:2986000 HCH4g1272 HCH-Chr4:8772694 2.80E-47 dispersed
HCH4g1272 HCH-Chr4:8772694 HCH6g0220 HCH-Chr6:2884158 3.20E-24 dispersed
HCH4g1272 HCH-Chr4:8772694 HCH4g1275 HCH-Chr4:8801897 1.70E-17 proximal
HCH12g0399 HCH-Chr12:2281322 HCH4g1272 HCH-Chr4:8772694 1.00E-42 wgd
HCH4g0461 HCH-Chr4:2981854 HCH4g1272 HCH-Chr4:8772694 2.30E-42 wgd
HCH4g1272 HCH-Chr4:8772694 HCH6g0276 HCH-Chr6:3882899 3.90E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33508 PF00847 AP2 9.00E-12 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1272 - - - 0.0