Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1273 ATGAAAATGAAACTTGTTGGTATTTTACTACCCATGTGGGTTTTGTATTCCTTGATACCAATAATTGATGCCAGACCAGAGCTTGCTGGGTTCTTCTTTTCTGGAACTGTTTATCTTTCTGGGAAAGAACCCATTTCTCACGTTGTGTCAAAAATGGAAGCTCAATCACCTGGAGTTGCTGAGATTAGAGTAGTGCACCACCAAGATTTGAACAAAAGAATTCTCATAGCTTTGATTGTTTCTTCTACTCTCCTTGGAGCACTACTGCTGTTCCTTGTATGTTTTTGGATATGTCGTCAGAATAAGTTGAATCGTGACGGAAAATGTCGAAAGAACTTGGAGGCTCCGAAAGGGATGTCATTGAGTCCAATTATGTCCAGATTTAACTCTTTGCGGACCGCTAATTTTAAAGGTTCAGTTTCGACCATTGATTACAAACTGTTGGAATCGGCAACCGACAATTTCAGCAAAAGTAATGTCTTGGGAGAGGGTGGTTCAGGACATGTTTACAGAGCTTGTTTCAATGATAAAATGTTGGCAGCTGTGAAGAGAATGGATGGAGCAGGACTGGATGCTGAAAGAGAATTTGAGAATGAGGTGAACTGGTCGTGTAAATTACGACATCAAAATATCATCAAACTTTTGGGGTACTGTACTCACGGTGAAGCACGGTTTCTTGTGTATGAGATGATGCAGAATGGATCCTTGGAATCACAATTGCATGGACCTACACATGGATCAGCTTTAACTTGGCATCTCCGGATGAAGATTGCTGTTGATGTTGCAAGAGGATTGGAATATCTTCATGAGCACCGAAATCCTCCTGTCATTCATCGGGATTTAAAATCATCAAATATCCTCCTGGATTCAGACTGTAATGCGAAGCTTTCCGACTTTGGCCTCACTGTAAACTTGGGAGCACAAAATAAAAACATAAAGCTCTCTGGAACTTTGGGTTACGTTGCTCCTGAATATCTTTTAGACGGTAAACTAACTGACAAAAGCGATGTCTACGCTTTCGGAGTCGTTCTTTTGGAGCTTCTGACAGGAAAGAAACCTGTGGAGAAGATGGGACCTGCTCAATCCCAATCAATAGTTTCTTGGGCCATCCCTCAGCTTAGTGACAGATCGAAACTGCCAAAAGTTGTCGATCCCGTGATAAGGGACACAATGGATTTAAAGCACTTATATCAAGTAGCTGCTGTGGCTGTGTTATGCGTACAATCAGAACCAAGTTATCGGCCATTAGTTACCGATGTTTTGCATTCCCTCATCCCTCTCGTACCCGTAGAGCTCGGAGGATCGCTGAGAATTACAGAACCACTACCCCCAAAAACACCACCTTCAACCATCTGA 1356 42.26 MKMKLVGILLPMWVLYSLIPIIDARPELAGFFFSGTVYLSGKEPISHVVSKMEAQSPGVAEIRVVHHQDLNKRILIALIVSSTLLGALLLFLVCFWICRQNKLNRDGKCRKNLEAPKGMSLSPIMSRFNSLRTANFKGSVSTIDYKLLESATDNFSKSNVLGEGGSGHVYRACFNDKMLAAVKRMDGAGLDAEREFENEVNWSCKLRHQNIIKLLGYCTHGEARFLVYEMMQNGSLESQLHGPTHGSALTWHLRMKIAVDVARGLEYLHEHRNPPVIHRDLKSSNILLDSDCNAKLSDFGLTVNLGAQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLTGKKPVEKMGPAQSQSIVSWAIPQLSDRSKLPKVVDPVIRDTMDLKHLYQVAAVAVLCVQSEPSYRPLVTDVLHSLIPLVPVELGGSLRITEPLPPKTPPSTI 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8778717 8781728 - evm.model.ptg000015l.1273 HCH4g1273 543517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1273 451 SUPERFAMILY Protein kinase-like (PK-like) 129 424 IPR011009 -
HCH4g1273 451 PANTHER OS01G0750732 PROTEIN 67 428 IPR050885 -
HCH4g1273 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1273 451 ProSitePatterns Protein kinases ATP-binding region signature. 161 183 IPR017441 GO:0005524(InterPro)
HCH4g1273 451 SMART serkin_6 155 425 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1273 451 FunFam probable receptor-like protein kinase At1g80640 231 429 - -
HCH4g1273 451 Gene3D Transferase(Phosphotransferase) domain 1 231 429 - -
HCH4g1273 451 Pfam Protein kinase domain 156 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1273 451 Gene3D Phosphorylase Kinase; domain 1 120 230 - -
HCH4g1273 451 ProSiteProfiles Protein kinase domain profile. 155 425 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1637 HCH-Chr12:43476148 HCH4g1273 HCH-Chr4:8778717 1.50E-68 dispersed
HCH4g1273 HCH-Chr4:8778717 HCH7g0117 HCH-Chr7:761567 2.60E-75 dispersed
HCH9g0516 HCH-Chr9:3311571 HCH4g1273 HCH-Chr4:8778717 6.60E-32 dispersed
HCH9g0594 HCH-Chr9:3996829 HCH4g1273 HCH-Chr4:8778717 1.30E-50 dispersed
HCH12g0398 HCH-Chr12:2274416 HCH4g1273 HCH-Chr4:8778717 1.70E-138 wgd
HCH4g0459 HCH-Chr4:2967227 HCH4g1273 HCH-Chr4:8778717 7.00E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81468 PF00069 Pkinase 4.70E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1273 - - - 0.0