Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1310 ATGGCTGGTACTTCGCTTCATGGAACGCTTCATGCTACTATCTATGAAGTGGATAAGTTGCATACTGGCGGTGGATCCAATGTCTTCACCATGTTTGTGCAAAACATTGAGGAGGCTGTTGGACTTGGCAAAGGAGTTACCAAACTATATGCAACTATAGATTTAGAAAAGGCTAGAGTTGGGAGGACCAGGACCTTAGAAAATGATCCCTCTAACCCAAGATGGTATGAATCTTTTCACATTTACTGTGCCCATACGGCATCTAATGTTATCTTCACTGTGAAGGATGATAATCCTATTGGTGCAACTTTGATTGGACGGGCATATGTACCTGTGGAAGACCTCTTAGATGGAGAGGAAGTGGACAGATGGGTTGAGATCTTAGATGAAGAAAAGAATCCGATAAAGGGAGAATCTAAGATTCATGTCAAACTACAATACTTCAGTGTCACTAAGGATCGCAATTGGGGTCGTGGTATCAGAAGTCATAAATTTCCTGGAGTTCCCTATACATTTTTCTCACAAAGGCAAGGTTGTAGGGTTTCTTTGTACCAAGATGCTCATATTCCTGATAATTTTATTCCTAAAATACCTCTTGCTGGAGGAAAGTATTATGAACCCCACAGATGTTGGGAAGATATTTTTGATGCCATAGAAAATGCGAAGCACCTGATCTACATCACCGGATGGTCCGTTTATACTGAAATTTCCTTGGTAAGGGACTCGAGGAGGCAAAAGCCTGGAGGTGACACCATGCTTGGTGAGCTGCTTAAGAAGAAAGCAAGTGAAGGTGTCAGGGTTCTCATGCTTGTCTGGGATGACAGAACATCTGTTGGTTTGTTGAAAAAGGATGGACTGATGGCCACTCATGATGAAGAAACTGAACGCTTCTTTCAAGATACTGATGTGCATTGTGTCTTGTGCCCTCGTAATCCTGATGATGGTGGAAGCATAGTCCAGGATTTACAAATCTCTACCATGTTCACTCATCATCAGAAGATTGTTGTGGTGGATAGCACAATGCCTAGTGGAGAGTCGGATAAGAGAAGAATTGTGAGTTTTGTTGGTGGTCTTGATCTTTGTGATGGAAGGTATGATACTCCCTTTCATTCCCTTTTCAGGACATTGGATACTGCACATCACGATGATTTCCATCAACCAAATTTTGTTGGCGCATCGATAACAAAAGGTGGACCAAGGGAACCATGGCATGACATCCATTCCAGGCTTGAAGGACCCATTGCATGGGATGTCTTGTTCAATTTTGAGCAAAGGTGGAAAAAGCAAGGTGGGAAGGATGTACTTGTGCAGATTCGAGAGCTTGATGAAATAATTATCCCTCCATCTCCTGTTATGTACCTTGATGACCGTGAAACCTGGAATGTTCAGTTGTTTAGATCAATTGATGGTGGAGCTGCTTTTGGCTTTCCTGAGACCCCTGAAGATGCTGCTAGAGCTGGGCTTGTCAGTGGGAAAGATAACATTATTGATCGAAGCATTCAGGATGCTTATATTAATGCTATTCGGCGAGCTAAGAATTTTATTTATATTGAAAACCAGTATTTTCTTGGAAGTTGTTTTGGATGGTCTCCTGATAACATCAAGCCCGAGGATATCGGTGCCTTGCATTGTATCCCAAGGGAGCTGTCCATGAAGATAGTCAGTAAGATTAAAGCAGGGGAAAGGTTCACTGTCTACGTAGTTGTTCCAATGTGGCCAGAAGGAATACCAGAAAGTGCATCAGTTCAGGCAATATTAGATTGGCAGAGGAGGACAATGGAAATGATGTATAAAGATGTAACTGAGGCGCTTAGGGATAATGGCATTGAGGAAGACCCTCGTAACTACTTGACATTTTTCTGTCTTGGTAACCGTGAAGTCAAGAGGCCTGGGGAATATGAACCTTCAGAAACACCAGAGGACGATTCCGATTATTTCAGAGCCCAGCAGGCCAGGCGTTTCATGATTTATGTTCACACCAAGATGATGATTGTTGATGACGAATACATAATTGTTGGATCAGCAAATATCAACCAAAGATCAATGGATGGTGCAAGGGACAGTGAGATAGCAATGGGATCCTATCAGCCGTATCATCTTGCGACTCATGAACCAGCACGTGGTCAAATCCATGGTTTCCGTATGTCCCTATGGTATGAACACCTTGGTATGCTTAATGAATCTTTCCTTCAGCCAGAGAGTGAAGATTGTGTTGCAAAGGTCAACAGAATTGCTGATAAATATTGGGACATGTATTCAAGTGAGACACTTGAAAGGGACTTGCCTGGTCATCTGCTCCGCTATCCCATAGGCATTTCCAGTGAAGGAGACGTCACAGAGCTCCCCGGATTTGAGTTTTTCCCCGATACCAAAGCTCGTATACTTGGAACCAAATCGGACTACCTCCCTCCCATCCTCACCACCTAA 2427 43.1 MAGTSLHGTLHATIYEVDKLHTGGGSNVFTMFVQNIEEAVGLGKGVTKLYATIDLEKARVGRTRTLENDPSNPRWYESFHIYCAHTASNVIFTVKDDNPIGATLIGRAYVPVEDLLDGEEVDRWVEILDEEKNPIKGESKIHVKLQYFSVTKDRNWGRGIRSHKFPGVPYTFFSQRQGCRVSLYQDAHIPDNFIPKIPLAGGKYYEPHRCWEDIFDAIENAKHLIYITGWSVYTEISLVRDSRRQKPGGDTMLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETERFFQDTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSTMPSGESDKRRIVSFVGGLDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFVGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDVLVQIRELDEIIIPPSPVMYLDDRETWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWSPDNIKPEDIGALHCIPRELSMKIVSKIKAGERFTVYVVVPMWPEGIPESASVQAILDWQRRTMEMMYKDVTEALRDNGIEEDPRNYLTFFCLGNREVKRPGEYEPSETPEDDSDYFRAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGSYQPYHLATHEPARGQIHGFRMSLWYEHLGMLNESFLQPESEDCVAKVNRIADKYWDMYSSETLERDLPGHLLRYPIGISSEGDVTELPGFEFFPDTKARILGTKSDYLPPILTT 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9179378 9183941 - evm.model.ptg000015l.1310 HCH4g1310 543554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1310 808 SMART pld_4 326 364 IPR001736 GO:0003824(InterPro)
HCH4g1310 808 SMART pld_4 654 681 IPR001736 GO:0003824(InterPro)
HCH4g1310 808 FunFam Phospholipase D 467 700 - -
HCH4g1310 808 SMART C2_3c 9 124 IPR000008 -
HCH4g1310 808 Gene3D C2 domain 7 157 IPR035892 -
HCH4g1310 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
HCH4g1310 808 CDD C2_plant_PLD 6 148 - -
HCH4g1310 808 PANTHER PHOSPHOLIPASE D 14 795 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
HCH4g1310 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824(InterPro)
HCH4g1310 808 Pfam Phospholipase D Active site motif 656 681 IPR001736 GO:0003824(InterPro)
HCH4g1310 808 Pfam Phospholipase D Active site motif 327 364 IPR001736 GO:0003824(InterPro)
HCH4g1310 808 Gene3D Endonuclease Chain A 200 442 - -
HCH4g1310 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824(InterPro)
HCH4g1310 808 SUPERFAMILY Phospholipase D/nuclease 151 439 - -
HCH4g1310 808 CDD PLDc_pPLDalpha_2 492 701 - -
HCH4g1310 808 FunFam Phospholipase D delta 201 444 - -
HCH4g1310 808 SUPERFAMILY Phospholipase D/nuclease 446 738 - -
HCH4g1310 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
HCH4g1310 808 Pfam C2 domain 44 126 IPR000008 -
HCH4g1310 808 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
HCH4g1310 808 Gene3D Endonuclease Chain A 477 697 - -
HCH4g1310 808 Pfam Phospholipase D C terminal 727 798 IPR024632 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0820 HCH-Chr4:5270106 HCH4g1310 HCH-Chr4:9179378 3.00E-197 dispersed
HCH4g1310 HCH-Chr4:9179378 HCH6g0948 HCH-Chr6:44300287 3.10E-199 dispersed
HCH6g0115 HCH-Chr6:1450375 HCH4g1310 HCH-Chr4:9179378 1.90E-174 transposed
HCH4g0435 HCH-Chr4:2846438 HCH4g1310 HCH-Chr4:9179378 0.00E+00 wgd
HCH4g1310 HCH-Chr4:9179378 HCH6g0221 HCH-Chr6:2927551 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1310 K01115 - csv:101206113 1549.26