Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1319 ATGACTACATATTTTCCTACTTTAAGCAATCAAAGAGATGATATGTTAGGAGACCAGAAAATTGGTTCTTCTTGCCCGGAATCGCCTTTCGGTTCCGGGAATTTGATGATGTTCATGAATCAAGACCCTACTGGAAGACCCTATTCAGAGATGTTTTCTGGGGTCTCTTCAAACTATGTTGAAGCTGGGGGAGATAGAAATGAGATAGGTTTCATTCCCCCTATTGTGGGAATTTTGGATGACTCAAATTTCCAATGTCAGGGAGTGTCACTTAGCCTTGCCACTCAGTCACCTTCTTTAGTTTCCATTCCTTCATTTCCACCCCATTATCAGACCCCTCCCATGTCTTCTTTCATGAATGCATCGCTTCCGATCTTCGAGAAGAGATTGAATCCGATAGTTTGCAAGTCTGATGAAAGCATTCGGGGTGATGTGAATAACGGTGTGTACTTGGCGGCTGGCTCTGCAAACTCTACATTGAATTCAGTATACATTGAAGCAGCTCAGCAGTTGCTTGATGAAATGGTCAGTGTACGAGAAGCTTTAAAGGAGCTTAGATCTAAGAAACACAGAGCTTTCAATGGCATGGGTTTAGATTGCAGCAAAGAAAATGATGGGGGCTCTAATGATCTATCTGTGGAGATGTCTTCGGATGCCAGGGACTCGATTTCCATTTCCTCCTGTGATCTATCGCCAGCCGAACGGCAGGATCTGAAGAACAAAAGTTCAAAGCTTTTGCCCTTGTTGAGTGAGGTGGATCGAAGATATAAGCTATATTACCAACAGGTACAATATTTGGCATCGTCTTTTGATATGGTCGCAGGCCGTGGGGCTGCAGAATTTTATACTGCACTCGCACACCGAACTATTTCCTGCCACTTTCGTCGTTTGAGAGATGCAATCAATGCCCAGATTGAGGTCACCAGGAGAACCTTGGGAGAGCAAGATACTTCACTTTCTGGTCAAGAGGGAATACCCCGTCTCCGCTTTGTCGACCAGCAGCTCAGACAACAGAGAGCCCTTCAGCAGCTTGGTGTGACACAACATTGTTGGAGGCCTCAAAGAGGGCTTCCTGAAAGTTCGGTTTCAATTCTTCGTGCTTGGCTGTTCGAGCATTTTCTCCATCCATATCCCAAGGATTCAGAGAAACTCAAGCTAGCAAGACAGACTGGCTTGACCAGAAATCAGGTTGCAAACTGGTTCATTAATGCTCGTGTACGTCTTTGGAAACCGATGGTTGAGGAGATGTACAAAGAAGAATTCGGAGACTCGAATATGGATTTCAAATCTTCACCAGAAAATGCATCCAAAGCATCATGGAACAACTTGCTATCCGAAGATAGGGGAGACGAGTTACAGGAAAGCATGAAATCTGCAGCCACTAATGTCGAGCGAGCCCTCTACCGCACATGTTCGAATGACGACATGATCAAGTCCAACAGCTTTTCAGTCGGTGGAGACATTTCGCTTGCACTGGAGTTGAAGCACTGTGAAGGTGATGGATTTGCCATGTTTAGCCGTAGCAACATGGAGAATAGTAATGCCATTGTTGCTTCTGTCGAGCTCGAGTCGCAGGATTATCCATGCCTGGAACCCAAAAGGCATCAGTGCAGGCTCACAAGTTCAAATATGTTGCATGATTTTGTAGTCTGA 1653 45.13 MTTYFPTLSNQRDDMLGDQKIGSSCPESPFGSGNLMMFMNQDPTGRPYSEMFSGVSSNYVEAGGDRNEIGFIPPIVGILDDSNFQCQGVSLSLATQSPSLVSIPSFPPHYQTPPMSSFMNASLPIFEKRLNPIVCKSDESIRGDVNNGVYLAAGSANSTLNSVYIEAAQQLLDEMVSVREALKELRSKKHRAFNGMGLDCSKENDGGSNDLSVEMSSDARDSISISSCDLSPAERQDLKNKSSKLLPLLSEVDRRYKLYYQQVQYLASSFDMVAGRGAAEFYTALAHRTISCHFRRLRDAINAQIEVTRRTLGEQDTSLSGQEGIPRLRFVDQQLRQQRALQQLGVTQHCWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSNMDFKSSPENASKASWNNLLSEDRGDELQESMKSAATNVERALYRTCSNDDMIKSNSFSVGGDISLALELKHCEGDGFAMFSRSNMENSNAIVASVELESQDYPCLEPKRHQCRLTSSNMLHDFVV 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9296258 9298412 - evm.model.ptg000015l.1319 HCH4g1319 543563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1319 550 Gene3D - 347 425 - -
HCH4g1319 550 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 139 441 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH4g1319 550 Pfam Homeobox KN domain 368 407 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH4g1319 550 SMART HOX_1 351 415 IPR001356 GO:0003677(InterPro)
HCH4g1319 550 Coils Coil 165 188 - -
HCH4g1319 550 CDD homeodomain 351 412 IPR001356 GO:0003677(InterPro)
HCH4g1319 550 SUPERFAMILY Homeodomain-like 352 419 IPR009057 -
HCH4g1319 550 SMART prehox3 153 303 IPR006563 -
HCH4g1319 550 Pfam Associated with HOX 160 301 IPR006563 -
HCH4g1319 550 ProSiteProfiles 'Homeobox' domain profile. 348 411 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1297 HCH-Chr2:55081650 HCH4g1319 HCH-Chr4:9296258 1.20E-66 dispersed
HCH4g0753 HCH-Chr4:4846249 HCH4g1319 HCH-Chr4:9296258 3.40E-60 dispersed
HCH4g1319 HCH-Chr4:9296258 HCH5g0533 HCH-Chr5:3672278 2.30E-57 dispersed
HCH4g1319 HCH-Chr4:9296258 HCH2g0479 HCH-Chr2:48310821 1.10E-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33511 PF07526 POX 3.60E-38 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1319 - - - 0.0