Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1324 ATGTACGGAAGAAAAGCATTCCAGTTGGTGAAAGAGCAAGCAAGCGGCGAGAAAGGCCAGATTATGCATTTCAATAGCGACCTGTTTGATCAGGTTATTTCAGAATGTGAGCAGCATCATCTTGAGCTCCAATCCTTGATTAGGAAAATGCAGGAAGAAGGATTGGATCTACAGACAACTAAGAATGAAGATCATTTTGGTGCGCTCATTCATCACCTTGCTTTGGTTCGCAATAAACGATGCCTAATGGCTTATATGTATACTCGAGCTGAGATTATAAGAAGTTTGATATGGAAGGTCGGGTCTGTGCTTCCAACAGAAATACAAGAGAAGCTCAGCAACTCAGAGGAAGAGTATTTTAAGAAGCACTCTGCAGCTTTGAAAGCATCTATGTCGAGAGTGGAATTGGATTTGACTGTGGATATGGTACCACCTAAAGATCCATATATCCAAGTGAGAGTACTTGATGATATCGGTGAAGGAATCGTACTCAGTGATGATAAAACAGCAAATTTTGCCCGTCATTCCATACATTTTCTTAAACGAACTGATGCTGAACAATTCATCTCACGGGGGTTAATGGAGGAGCTCACAGGTTGA 600 41.33 MYGRKAFQLVKEQASGEKGQIMHFNSDLFDQVISECEQHHLELQSLIRKMQEEGLDLQTTKNEDHFGALIHHLALVRNKRCLMAYMYTRAEIIRSLIWKVGSVLPTEIQEKLSNSEEEYFKKHSAALKASMSRVELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFARHSIHFLKRTDAEQFISRGLMEELTG 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9355638 9358031 + evm.model.ptg000015l.1324 HCH4g1324 543568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1324 199 Coils Coil 33 63 - -
HCH4g1324 199 SUPERFAMILY GINS helical bundle-like 1 146 IPR036224 -
HCH4g1324 199 PANTHER PARTNER OF SLD5 1 198 IPR005339 GO:0000811(InterPro)|GO:0000811(PANTHER)|GO:0006260(InterPro)|GO:1902983(PANTHER)
HCH4g1324 199 Pfam GINS complex protein helical bundle domain 61 133 IPR021151 -
HCH4g1324 199 CDD GINS_A_psf1 3 136 IPR005339 GO:0000811(InterPro)|GO:0006260(InterPro)
HCH4g1324 199 CDD GINS_B_Psf1 148 197 - -
HCH4g1324 199 Gene3D - 1 134 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1324 K10732 - csv:101205409 355.525