Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1352 ATGAGAAAAGAAGAAAATCATGCCACAGCAAATACCAGAGAGCTCCACGGTAGAATTACACGTGCTCGAGCTGCTGCATTTTGTGCATCTGCACAACTGCCTCCTTCAAAGGTTTTTGCTGAGAAGCCGGTTGCTAGAACTAATCTGAAAAGAGCTGCTTCAGATGAAAATAACAGCTGTTCTATTGATAAATCACCTCAGCGGTGTAAGAGAAGGGCCGTGCTTCAGGATGTCTCCAATATATGCTGTGGACCTTCATATGCAAAATGTTTTGTTGCAGCTAAAGTTCAGACTAGAAATAGTAAAAACCGTCTCAAGAAATACAAAGGTGCCGCTCAATCCAAGTTCCCTCCTGATTTGAGAACACAGGGCCTGCAAGAGAAGTTCAAACCAAAATATAAGTTGGAAGCTGAGCAGTCAAGTAATTTTCAAGACCATCAGATACATCCGGGGTTAAGTAGTATAAAGGAGGAGGTCATAGATGGCCCTCGGCTTGATAGTGGGAGATCTAAAAGTCCTTCACATTCACAGAGTTTTCCAGATAAAGCGGAGACAGTATTGCTTCCTGAGACACAAAGTAACGTGGATATTATGGACATTGATTCTAATGACAGAGATTCTCAGTTGTGCAGTGTCTATGCTTATGATATCTATAACAATCTACGTGTTGCCGAGCTAACCAGAAGACCGAATCCCAATTTCATGGAAACAATGCAAAGTGATATTACCCAAAGCATGCGTGGTATATTGGTCGATTGGCTTGTAGAGGTATCGGAGGAATACAAGTTAGTACCGGATACTCTCTACCTAACTGTATATTTCATTGATTGGTTTCTCTCTCAAAATTACATTGAGAGACAAAAGCTTCAACTGTTGGGTATCACTTGCATGTTAATAGCCTCGAAGTACGAAGAAATTTGTGCACCACGCGTCGAAGACTTCTGTTTCATCACTGACAGCACCTATGCAAAAGAGGAGGTATTGAAAATGGAAGGTCAAATATTGAAGTGTTTGGGCTTTCAACTTTCTACACCGACTGCAAAATCTTTTCTCAGGAGATTTGTTCGAGCTGTACAAGCTACTAATAAGACCCCTAGTCTTGAACTCGAATGTCTGGCCAATTATCTAGCTGAACTAACGTTGGTCGACTATGGTTTCTTGAATTTCCTTCCCTCGGTTATAGCCGCATCAGTTGTTTTTCTTTCGAAATGGACATTGGATCAGTCAAACCACCCATGGAATCCGACGCTAGAACATTACACTTCCTACAAGGCATCAGATTTGAAACAATCTGTTCTTGCTTTACAAGATCTACAGTTGAACACGAATGGTTGTCCTCTTAGTTCAATACGCGTCAAGTATCGACAAGAGAAGTTCAAAGCTGTTGCAGCTCTGTCTTCCCCGAAACTTCTCGACACGCTATTCTGA 1428 41.67 MRKEENHATANTRELHGRITRARAAAFCASAQLPPSKVFAEKPVARTNLKRAASDENNSCSIDKSPQRCKRRAVLQDVSNICCGPSYAKCFVAAKVQTRNSKNRLKKYKGAAQSKFPPDLRTQGLQEKFKPKYKLEAEQSSNFQDHQIHPGLSSIKEEVIDGPRLDSGRSKSPSHSQSFPDKAETVLLPETQSNVDIMDIDSNDRDSQLCSVYAYDIYNNLRVAELTRRPNPNFMETMQSDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVYFIDWFLSQNYIERQKLQLLGITCMLIASKYEEICAPRVEDFCFITDSTYAKEEVLKMEGQILKCLGFQLSTPTAKSFLRRFVRAVQATNKTPSLELECLANYLAELTLVDYGFLNFLPSVIAASVVFLSKWTLDQSNHPWNPTLEHYTSYKASDLKQSVLALQDLQLNTNGCPLSSIRVKYRQEKFKAVAALSSPKLLDTLF 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9549372 9554099 - evm.model.ptg000015l.1352 HCH4g1352 543596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1352 475 PIRSF Cyclin_A_B_D_E 10 474 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
HCH4g1352 475 CDD CYCLIN_AtCycA_like_rpt1 206 341 - -
HCH4g1352 475 FunFam Cyclin A1 333 464 - -
HCH4g1352 475 Gene3D - 230 343 - -
HCH4g1352 475 MobiDBLite consensus disorder prediction 162 185 - -
HCH4g1352 475 FunFam Mitotic cyclin 6 230 330 - -
HCH4g1352 475 SUPERFAMILY Cyclin-like 206 342 IPR036915 -
HCH4g1352 475 SMART Cyclin_C_2 345 468 IPR004367 -
HCH4g1352 475 SMART cyclin_7 252 336 IPR013763 -
HCH4g1352 475 SMART cyclin_7 349 437 IPR013763 -
HCH4g1352 475 Pfam Cyclin, C-terminal domain 345 467 IPR004367 -
HCH4g1352 475 CDD CYCLIN_AtCycA-like_rpt2 345 459 - -
HCH4g1352 475 Gene3D - 216 464 - -
HCH4g1352 475 PANTHER CYCLINS 194 455 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH4g1352 475 MobiDBLite consensus disorder prediction 169 185 - -
HCH4g1352 475 SUPERFAMILY Cyclin-like 345 470 IPR036915 -
HCH4g1352 475 Pfam Cyclin, N-terminal domain 216 343 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0338 HCH-Chr12:1958231 HCH4g1352 HCH-Chr4:9549372 8.40E-112 dispersed
HCH4g0610 HCH-Chr4:4008048 HCH4g1352 HCH-Chr4:9549372 6.70E-77 dispersed
HCH4g1352 HCH-Chr4:9549372 HCH7g0708 HCH-Chr7:8615998 7.90E-70 dispersed
HCH13g0150 HCH-Chr13:958674 HCH4g1352 HCH-Chr4:9549372 3.00E-88 transposed
HCH4g0400 HCH-Chr4:2601293 HCH4g1352 HCH-Chr4:9549372 1.40E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1352 K06627 - csv:101222299 678.707