Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1363 ATGGAGATCATAAAAAAGAAAAAAAATATAATTGTCTCCTCTCCATTAATGTCATCTTCTTTGATGGCAATCCTCCTGGTATTTCTCTCTCTCTTCTCACCAGTTGCCTTTGCAGCTCCCGGTTCCTTTGTTCCTAAAGATAACTTCCTCATTGACTGTGGTTCCACCAAGGATATTGGTCCACTTCCTGATGGAAGAGTGTTCAAGACTGATGATCAATCCAAGCAATACTTAGACGCCAAGGATGATATTATCGCCACCGCCCCATCGGGGACGAATGCGACTTCTCCGGTTGATTTGACCGCGAGAGTTTTCCTCCAGGAAGCTACTTATGCCTTTCAGATGGCAGAACCCGGTTGGCATTGGTTGCGCCTCCATTTCTTCCCTGTTCAAAGCAAAGACATTGATCTTTTGCAGGCAAAATTCTCAGTTGCAACTGAAAAGCACGTGTTGCTCCACAGTTTTAGCATCCAAAATGAATCAAACTATGTTCTTAAGGAGTTTCTGATTAATGTAACTGACCCAAAACTGCTGATCAAATTCTTCCCAATGAAGAATTCAGCTGCTTTCATCAATGCCATTGAGGTTGTCTCGGCTCCTGAGTACTTGATTTCAGACACCAACATCGAGCTCTCTCCGGTCGGTCAAATCCAAGGCTTGACAAAATATGCATTCCAAACAATGTATAGGCTGAATATGGGAGGACCTTTAATAACTCCAAGAAATGACACTCTTGGCAGGACATGGCAGCCAGATGAGGCTTACAGGAACCCGAAAAATTTTGGTATAAGTACCTCTGTTGAGAGTAGCACCATCAGATACCAAGAAGGGAAGGAAAAAACAGGCATATTGATTGCTCCTCCAACTGTGTACTCGAGTTGTATTGAAATGGCCAGTGTTAATCTCAATGTGCCAAATTTCAATGTCACATGGAAATTCGAGGCAGATCCTTCGTTCGGTTATCTGATTCGCTTCCATTTTGCAGACATCATCAGCAAAGCTCTTAATACTCTCTACTTCAATGTTTATGTAAATGGGAAACCAGCAATAACCAACTTAGATTTATCACACAGGCTTGGAACTCTGTCAACTGCATATTACAAGGATATTGTGGTTAATGCTTCCTTGATTACAGATGGACTACTATCAGTTCAAATCGGTCCAGCCAATGTCGAAACCGGCGATGTCACTGCAATTCTAAACGGGTTAGAGGTGTTGAAGATAAGCAATTCTGTGGATAGTCTGGATGGAGAGTTTGGAGTGGATGGTAAATCTGCGAAAGGATCCAACCGTGGCACGGTGGCTGCCGTTGGGTTTGCAATGATGTTTGGCGCGTTTGTGGGGCTAGGCGCCATGGTGATGAAATGGCATAAAAGGCCTCAAGATTGGCAAAAGAGAAACAGTTTCTCTTCTTGGTTGCTTCCCGTACATGCTGGGGATACAAGTTTTATGACAAGTAAGACCTCATACGGGTCACACAAGACCAACATTTACTCATCTACTCTAGGCCTTGGTAGGTTCTTCACTTTGGCAGAGCTGCAAGAAGCTACCAAGAATTTCGATTCCAATTCCATAATTGGCGTTGGCGGGTTTGGAAATGTGTATATTGGAGTGATTGATGATGGGGTGAAGGTTGCTGTCAAGAGAGGAAATCCACAATCTGAACAAGGAATTACAGAATTCGAAACCGAAATTCAAATGCTTTCCAAACTCAGACACAGGCATTTGGTTTCACTCATTGGGTACTGTGATGAAAACTCTGAAATGATCTTGGTATATGAGTTCATGTCAAATGGTCCTTTCAGAGATCACTTGTATGGAAAGGACTTGCCTCAATTATCGTGGAAGCAAAGGTTAGAGGTCTGTATCGGAGCGGCTCGAGGGCTTCATTACCTTCACACAGGAACAGCACAAGGTATAATTCACCGTGATGTCAAAACAACCAACATTCTGCTGGATGAAAACCTCACAGCAAAAGTAGCTGATTTCGGGTTGTCAAAGGATGCACCAATGGGGCAAGGACATGTCAGTACGGCTGTGAAGGGAAGCTTCGGATATTTGGATCCAGAGTACTTCAGGAGGCAACAATTGACTGATAAATCAGATGTTTATTCCTTTGGGGTGGTTCTGCTTGAAGCTCTATGTGCAAGGCCTGCAATCAACCCATCTTTGCCAAGGGAACAAGTAAACTTGGCTGATTGGGCAATGCAGAAAAAGAGAAAGGGGTTGCTTGAAACCATTATGGATCCTAATCTTGTTGGTGCTATTAATCCTGAGTCCATGAAGAAGTTTGCAGAGGCAGCAGAGAAGTGTCTTGCTGAACATGGTGTTGACAGGCCAACCATGGGAGATGTGCTTTGGAATTTGGAGTATGCTTTGCAACTTCAAGAGGCTTTCTCACAAGGCAAGGCCGACGATGAAAGCAAAACCTCCGGCACGGTGGCTGCCTCCCCTGCTACTGCGGTTGAGGCTTCGAGTGCATCAGACTCTGATGACCGCCCCGTCGTGCAGCCGGAACAGAATAGTACTCCGGCCGAGGTCCAAGCCATTGATGAACACTCAGGAACTGCAATGTTTGCTCATTTTTCTAATCTCAATGGTAGATAA 2607 44.3 MEIIKKKKNIIVSSPLMSSSLMAILLVFLSLFSPVAFAAPGSFVPKDNFLIDCGSTKDIGPLPDGRVFKTDDQSKQYLDAKDDIIATAPSGTNATSPVDLTARVFLQEATYAFQMAEPGWHWLRLHFFPVQSKDIDLLQAKFSVATEKHVLLHSFSIQNESNYVLKEFLINVTDPKLLIKFFPMKNSAAFINAIEVVSAPEYLISDTNIELSPVGQIQGLTKYAFQTMYRLNMGGPLITPRNDTLGRTWQPDEAYRNPKNFGISTSVESSTIRYQEGKEKTGILIAPPTVYSSCIEMASVNLNVPNFNVTWKFEADPSFGYLIRFHFADIISKALNTLYFNVYVNGKPAITNLDLSHRLGTLSTAYYKDIVVNASLITDGLLSVQIGPANVETGDVTAILNGLEVLKISNSVDSLDGEFGVDGKSAKGSNRGTVAAVGFAMMFGAFVGLGAMVMKWHKRPQDWQKRNSFSSWLLPVHAGDTSFMTSKTSYGSHKTNIYSSTLGLGRFFTLAELQEATKNFDSNSIIGVGGFGNVYIGVIDDGVKVAVKRGNPQSEQGITEFETEIQMLSKLRHRHLVSLIGYCDENSEMILVYEFMSNGPFRDHLYGKDLPQLSWKQRLEVCIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENLTAKVADFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLLEALCARPAINPSLPREQVNLADWAMQKKRKGLLETIMDPNLVGAINPESMKKFAEAAEKCLAEHGVDRPTMGDVLWNLEYALQLQEAFSQGKADDESKTSGTVAASPATAVEASSASDSDDRPVVQPEQNSTPAEVQAIDEHSGTAMFAHFSNLNGR 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9721657 9724263 - evm.model.ptg000015l.1363 HCH4g1363 543607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1363 868 PANTHER OS07G0166700 PROTEIN 508 797 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
HCH4g1363 868 MobiDBLite consensus disorder prediction 803 848 - -
HCH4g1363 868 FunFam Receptor-like protein kinase FERONIA 596 810 - -
HCH4g1363 868 Gene3D Phosphorylase Kinase; domain 1 481 595 - -
HCH4g1363 868 FunFam Receptor-like protein kinase FERONIA 224 410 - -
HCH4g1363 868 ProSiteProfiles Protein kinase domain profile. 520 792 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1363 868 SUPERFAMILY Protein kinase-like (PK-like) 504 787 IPR011009 -
HCH4g1363 868 CDD STKc_IRAK 526 790 - -
HCH4g1363 868 FunFam Putative receptor-like protein kinase 48 200 - -
HCH4g1363 868 Gene3D Transferase(Phosphotransferase) domain 1 596 816 - -
HCH4g1363 868 Pfam Protein tyrosine and serine/threonine kinase 524 786 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1363 868 FunFam receptor-like protein kinase FERONIA 484 595 - -
HCH4g1363 868 SMART serkin_6 520 792 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1363 868 Pfam Malectin-like domain 51 407 IPR024788 -
HCH4g1363 868 MobiDBLite consensus disorder prediction 805 848 - -
HCH4g1363 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1363 868 Gene3D - 223 409 - -
HCH4g1363 868 Gene3D - 48 200 - -
HCH4g1363 868 ProSitePatterns Protein kinases ATP-binding region signature. 526 548 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1363 HCH-Chr4:9721657 HCH9g0843 HCH-Chr9:5967702 1.90E-162 dispersed
HCH4g1363 HCH-Chr4:9721657 HCH8g1279 HCH-Chr8:47967930 3.40E-252 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81469 PF12819 Malectin_like 3.10E-35 CL0202 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1363 - - - 0.0