Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1371 ATGGGAATCAATTCTAATCGAGTTGAAAACTTAGAGTATCATCATCGTACCCCGGAAACAATGCCACCGGCACCGCCGTCACAAGTGGTGGTGGAGATTCATCAAGTTTGTCTGCCACCAAAACAGACTACGTTTCAGAAACTTAAGCATAAGCTTTCGGAAATCTTTTTTCCTGACGACCCATTTTATAGATTTAAGAATCATACTTCTTTCTTCACAAAATTCGTTCTGGGTCTTCAATTTTTATTCCCTGTTTTTCAATGGGGTCCTGATTATACCCTTTCACTGCTTAAATCTGATGTTGTTTCTGGTCTCACAATTGCCAGCCTGGCTATTCCTCAGGGAATAAGTTATGCAAAGCTTGCTAATTTGCCACCCATCATTGGATTATATTCAAGTTTTGTGCCTCCACTGATATATTCTGTCCTTGGAAGCTCTAGACATCTAGCCGTTGGCCCGGTTTCGATTGCCTCTTTGGTCATGGGATCAATGATCAGTGAAGTGGTTTCTTATAGTGACCAGCCAATTCTATATCTTAAGTTAGCTTTCACTGCTACTTTCTTTGCTGGGGTATTCCAGGCATCTTTGGGTTTGTTAAGGTTAGGCTTTGTGATTGATTTTCTATCAAAGGCTACTTTAGTTGGCTTTATGGCTGGAGCAGCAGTCATTGTGTCACTGCAACAATTCAAGGGATTGCTCGGGATCGTCCATTTCACCTCCAAAATGCAATTTGTTCCTGTCATGTCATCTGTTTTTCACCACAAAAATGAGTGGTCCTGGCAAACCATTCTTTTAGGATTCAGTTTCCTGCTCTTTCTTCTGTTGACAAGGCATATTAGCATGAAGAAACCAAAGCTTTTCTGGATTTCGGCAGCTGCTCCATTGACATCAGTGATCATGTCCACTCTTGTAGTCTTCCTTCTCAAATCAAAGATGCCTGGAATCTCAGTGATTGGTCATTTGCCAAAGGGCCTCAACCCACCATCTGCAAACATGTTGTACTTTTCTGGCGCTCAATTGGCTCTTGCCATTAAAACTGGCATTATAACTGGAATTCTCTCGCTCACCGAAGGAATTGCAGTGGGAAGGACATTTGCTGGTTTGAAAAACTATCAAGTGGATGGGAATAAAGAAATGATGGCTATTGGTTTCATGAACATGGTTGGATCCTGTTCTTCATGCTATGTCACCACAGGATCATTTTCTAGATCAGCGGTAAATTATAATGCTGGGGCACAATCCGCAGTTTCAAATGTAGTGATGTCTGCAGCTGTGCTCATAACATTGCTGTTTCTAATGCCGCTGTTTCATTATACTCCAAATTTCATCCTAGCAGCCATCATTATAACAGCAGTAATTGGGCTAATTGACTACCAAGCGGCAATTAAATTGTTCAAAGTCGACAAGCTTGATTTCGTAGCTTGTCTTTGTTCTTTCTTTGGTGTTCTTTTCATTTCAGTTCCCTTGGGCCTTGCCATTGCAGTTGGAGTTTCAGTTTTCAAGATTATTCTACATGTCACCAGACCAAACACCATGGTTTTGGGGAATATTTCTGGGACTCAACTATTCCAAAACCTCGACCGATACAAAGAAGCCTTAAGAGTTCCTTCATTTCTCATTCTCGCCATTGAATCTCCAATCTACTTTGCGAATTCAACATACCTACAAGAAAGGATTCTAAGATGGGTTAGGGAAGAAGAAGAGCGAATAAGAGCAAACAATGAGAGCCCACTGAAATGTATAATCCTAGACATGACAGCCGTAACATCCATAGACACAAGTGGTATCGAGACAATATGCGAATTGAGAAAGATGATGGAGAAAAGATCACTACAGCTTGTGCTTGTGAATCCGGCTGGATATGTGATGGAAAAGCTTCATAAATCAGAGGTTTTGGAGTCCTTCAAATTCAATGGCCTCTATCTATCAGTTGGAGAAGCTATAGGTGACATTTCTTCATTGTGGAAGAGGCAGCCATAA 1980 41.16 MGINSNRVENLEYHHRTPETMPPAPPSQVVVEIHQVCLPPKQTTFQKLKHKLSEIFFPDDPFYRFKNHTSFFTKFVLGLQFLFPVFQWGPDYTLSLLKSDVVSGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSVLGSSRHLAVGPVSIASLVMGSMISEVVSYSDQPILYLKLAFTATFFAGVFQASLGLLRLGFVIDFLSKATLVGFMAGAAVIVSLQQFKGLLGIVHFTSKMQFVPVMSSVFHHKNEWSWQTILLGFSFLLFLLLTRHISMKKPKLFWISAAAPLTSVIMSTLVVFLLKSKMPGISVIGHLPKGLNPPSANMLYFSGAQLALAIKTGIITGILSLTEGIAVGRTFAGLKNYQVDGNKEMMAIGFMNMVGSCSSCYVTTGSFSRSAVNYNAGAQSAVSNVVMSAAVLITLLFLMPLFHYTPNFILAAIIITAVIGLIDYQAAIKLFKVDKLDFVACLCSFFGVLFISVPLGLAIAVGVSVFKIILHVTRPNTMVLGNISGTQLFQNLDRYKEALRVPSFLILAIESPIYFANSTYLQERILRWVREEEERIRANNESPLKCIILDMTAVTSIDTSGIETICELRKMMEKRSLQLVLVNPAGYVMEKLHKSEVLESFKFNGLYLSVGEAIGDISSLWKRQP 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10035240 10038921 + evm.model.ptg000015l.1371 HCH4g1371 543615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1371 659 CDD STAS_SulP_like_sulfate_transporter 529 644 - -
HCH4g1371 659 FunFam Sulfate transporter 31 508 653 - -
HCH4g1371 659 SUPERFAMILY SpoIIaa-like 534 649 IPR036513 -
HCH4g1371 659 ProSiteProfiles STAS domain profile. 528 651 IPR002645 -
HCH4g1371 659 PANTHER SULFATE TRANSPORTER 73 648 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g1371 659 NCBIfam sulfate permease 84 647 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g1371 659 Gene3D STAS domain 508 652 IPR036513 -
HCH4g1371 659 Pfam Sulfate permease family 97 476 IPR011547 GO:0016020(InterPro)
HCH4g1371 659 Pfam STAS domain 530 647 IPR002645 -
HCH4g1371 659 ProSitePatterns SLC26A transporters signature. 126 147 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1371 HCH-Chr4:10035240 HCH4g1880 HCH-Chr4:50423243 3.80E-171 dispersed
HCH1g0037 HCH-Chr1:2625862 HCH4g1371 HCH-Chr4:10035240 1.30E-237 transposed
HCH4g1677 HCH-Chr4:18000567 HCH4g1371 HCH-Chr4:10035240 1.10E-210 transposed
HCH7g1247 HCH-Chr7:45318031 HCH4g1371 HCH-Chr4:10035240 2.90E-200 transposed
HCH4g1371 HCH-Chr4:10035240 HCH8g0768 HCH-Chr8:44302138 6.40E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1371 K17471 - csv:101203079 1095.49