Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1382 ATGGATTTGTTAATGGCAACTGATAAAGGAGTAGTAAGAAGAAAGCATGGTTTTCATTTTCAAAGCATTTTATGCTGCTGCTTCTTCTTGATATTCTTCTTAGTGAAGTTTTGTGATTGCCAATCTGATATATTGGCACAAGGCCATGAGCTAAGACATGGGTCTGAGTTAGTTTCAGCCACTGGGATCTTTTCACTTGGTTTTTATGGTCCTGGCTTTTTGAATACTTTATATTTAGGAATTCGCTACTACAACCCAGGTCCCATGCAGCCTGTTTGGTTTGCCAATAGAAACTCTCCATTTCACACCAAATCTGGTTTGCTATCACTTACTATCGATGGCAATGGAAGCTTGAAAGTTGTGAGTAAAGAAGACTATCAGTTTTCTTTTTCACTCTATGATGTTGAAGAAGCAACCAATACGAGTGCCGTTTTGCTTGACAATGGCAACTTTGTGCTGCAAGAAATCTACTCAAATGGTTCGTTTAAGCGACAATTATGGCAAAGTTTCGATTATCCGACCGATACGCTTCTTCCGGGGATGAAACTTGGGATCAATCATAGGACTGGATCCACTTGGTCTCTAACATCATGGAGAGGCGGAGGTTCTCCTCATTCTGGTCCTTTTACACTTGCCATGAATCCCAACAATACAAACGAGTTACTGATGTTGCTTCGAGGAGATATCTTTTGGAGAAGCGGAAACTGGGAGCGTGGTCGTTTCGAGTTATCCGAAGAATTATCGAGCATCAACAACCGGTTCTTCAATTTGTGGAGATTTTCTAACGAGAATGAAACGTATTTCAATTATTCAACCTCTAGAAATAGCCCATCTAATTCTTCCCAGATTGCAAATGTTCCACAACCAGCATTAACTATGAATGAAGCAGGTTATTTACTATGGAGTATGATGAATGTGGAAGTTTATTGCCCTTTCTTTGAAGAAGAATTGGATTACAACAGCAATGGTATTGGAGAAGGGTGTGTGAAGCAACAACAGCACAAAGTTCCAAAGTGCAGGAATGTGAACTCTACATTTAGTTTCATGAATCGACAGCCGGAATTTGGTAGTATGGAAGGAAACAGTATAAAGTACAATGAGAGTGAGAATCTGACAACGTACGAATGTGGAAATATATGCATTTCTAACTGTGATTGTGTTGCATATGCTTATACAAATCAAGATGGCACTGGCTGCGAGATTTGGACCACTGGAGCAACTTTCATTTCAGGGGGCCAAGATGGAAAGCAGATTAAAGTCTTGAACATCTCTCAGAATTTGCGTTCCTACGAATATATTGAACGTCCAAAATCAAGGGTCAAGATGTGGATTCTTGTCAGCCTAGCAGGAGTGGCAACTATTCTTATTCTCTTGTGTTTTGTTTTCTGTGTGAGATGGAAAACACAAATAGTCAAAGTTTTTGAAAAAATATGGAGGAAGAAGGATTCAGAGCAGCAAAAGTTTCTATATGAAATGGGAGCCATCGGATCTAAAAGTTTAAACATTCTAAGAAGAAAGCATAAACAAAAAAGATATGGAAAAAAGAACCCAGAATTGCAGTTTTTCAGCTTTGAAAGTGTAGTTACTGCTACCAAGAATTTTGCAAAAGAAAATAAGCTTGGACAAGGTGGTTTTGGTCCTGTTTATAAGGGAAGTTTGGATGATGGCCAAGAAGTCGCCATTAAAAGACTCTCGAAGAGTTCTGGACAAGGATTAGAGGAGTTCAAGAATGAAGCAATATTGATTGCTAAACTGCAACACACTAATCTGGTTAGGCTTATTGGTTGCTGCATTTATAAAGAAGAGAAACTGCTAATTTATGAGTACATGCCCAACAAAAGCCTAGACTTCTTCCTCTTTGATCACGAGAAGAAGTTAACACTGGACTGGATTAGACGTTTCAATATAGTTGAAGGGATCATTCAAGGACTACTCTACCTTCATAACTACTCAAGACTACGGATAATTCACAGAGATTTAAAAGCTAGTAACATTTTACTCGACGATGAGATGAATGCAAAAATATCCGATTTTGGCATGGCTAGAATCTTTAAACCATCCGATCGTGAGGCAAACACAAGTAGGGTTGTCGGTACATATGGCTACATATCTCCAGAATATGCAATGGAGGGCATTTTCTCTATAAAATCAGATGTCTATAGTTTTGGAGTTTTGTTGCTGGAGATTATAACGGGTCACAAGAACTACAAGAATTTTGAGCATGAAGGGCATCTAAATCTCATAGGATATGCATGGGAATTATGGGTGAATGACAGAGGAGAAGAGCTGATTGATTCAACTTTGTGCAATTTAGTAGATGATCAAATATCAAAAGTTCTAAGATGCATTCATATAGGTCTTCTATGTGTCCAACAAATACCAGCAGATAGACCAACCATGTTAGATATTTCTTTCATGATTCACAATGATTCTACTCGACTTTCAATACCTAAACAGCCAGCATTTTCCTTCGGTAGAAACTCACAGCCGTCGAGGGGAGAGATACCCGGCGATCGGCCTAGATCTCAATCAACAACTGAAACTTATTCGATTAATAGGATGTCAATTTCAGAAATAGTTGGTAGGTGA 2589 38.7 MDLLMATDKGVVRRKHGFHFQSILCCCFFLIFFLVKFCDCQSDILAQGHELRHGSELVSATGIFSLGFYGPGFLNTLYLGIRYYNPGPMQPVWFANRNSPFHTKSGLLSLTIDGNGSLKVVSKEDYQFSFSLYDVEEATNTSAVLLDNGNFVLQEIYSNGSFKRQLWQSFDYPTDTLLPGMKLGINHRTGSTWSLTSWRGGGSPHSGPFTLAMNPNNTNELLMLLRGDIFWRSGNWERGRFELSEELSSINNRFFNLWRFSNENETYFNYSTSRNSPSNSSQIANVPQPALTMNEAGYLLWSMMNVEVYCPFFEEELDYNSNGIGEGCVKQQQHKVPKCRNVNSTFSFMNRQPEFGSMEGNSIKYNESENLTTYECGNICISNCDCVAYAYTNQDGTGCEIWTTGATFISGGQDGKQIKVLNISQNLRSYEYIERPKSRVKMWILVSLAGVATILILLCFVFCVRWKTQIVKVFEKIWRKKDSEQQKFLYEMGAIGSKSLNILRRKHKQKRYGKKNPELQFFSFESVVTATKNFAKENKLGQGGFGPVYKGSLDDGQEVAIKRLSKSSGQGLEEFKNEAILIAKLQHTNLVRLIGCCIYKEEKLLIYEYMPNKSLDFFLFDHEKKLTLDWIRRFNIVEGIIQGLLYLHNYSRLRIIHRDLKASNILLDDEMNAKISDFGMARIFKPSDREANTSRVVGTYGYISPEYAMEGIFSIKSDVYSFGVLLLEIITGHKNYKNFEHEGHLNLIGYAWELWVNDRGEELIDSTLCNLVDDQISKVLRCIHIGLLCVQQIPADRPTMLDISFMIHNDSTRLSIPKQPAFSFGRNSQPSRGEIPGDRPRSQSTTETYSINRMSISEIVGR 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10155199 10159051 + evm.model.ptg000015l.1382 HCH4g1382 543626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1382 862 SUPERFAMILY Protein kinase-like (PK-like) 517 822 IPR011009 -
HCH4g1382 862 SUPERFAMILY alpha-D-mannose-specific plant lectins 89 201 IPR036426 -
HCH4g1382 862 MobiDBLite consensus disorder prediction 822 847 - -
HCH4g1382 862 ProSiteProfiles PAN/Apple domain profile. 339 425 IPR003609 -
HCH4g1382 862 CDD STKc_IRAK 540 803 - -
HCH4g1382 862 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 23 821 - -
HCH4g1382 862 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 610 815 - -
HCH4g1382 862 Pfam Protein tyrosine and serine/threonine kinase 537 746 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1382 862 Gene3D Transferase(Phosphotransferase) domain 1 610 818 - -
HCH4g1382 862 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 499 609 - -
HCH4g1382 862 PIRSF SRK 16 862 IPR024171 GO:0004674(InterPro)
HCH4g1382 862 SMART blect_4 48 173 IPR001480 -
HCH4g1382 862 ProSiteProfiles Bulb-type lectin domain profile. 42 166 IPR001480 -
HCH4g1382 862 Pfam PAN-like domain 368 404 IPR003609 -
HCH4g1382 862 Gene3D - 36 170 IPR036426 -
HCH4g1382 862 Gene3D Phosphorylase Kinase; domain 1 506 609 - -
HCH4g1382 862 Pfam D-mannose binding lectin 92 199 IPR001480 -
HCH4g1382 862 CDD B_lectin 54 173 IPR001480 -
HCH4g1382 862 SMART serkin_6 534 783 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1382 862 ProSiteProfiles Protein kinase domain profile. 534 822 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1382 862 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0357 HCH-Chr10:2875594 HCH4g1382 HCH-Chr4:10155199 3.30E-97 dispersed
HCH4g1382 HCH-Chr4:10155199 HCH4g1384 HCH-Chr4:10170877 4.20E-263 dispersed
HCH4g1381 HCH-Chr4:10136416 HCH4g1382 HCH-Chr4:10155199 1.00E-55 tandem
HCH4g1382 HCH-Chr4:10155199 HCH4g1383 HCH-Chr4:10162714 2.00E-257 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81471 PF07714 PK_Tyr_Ser-Thr 9.10E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1382 - - - 0.0