Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1383 ATGGCCGCTAGCAGTACAAGTATCAGAATGAAGCTTTTTTTTCTCTACTTTTCTTGCTGTTTATGCTTCATATTACTGTTTTCAGTGGAGTTTTCTGATTGCCAATCCAATGATAACGCATTAGCACAATACCAAGAGCTGAGAGATGGGTCGATGTTAGTTTCAGCCAACGGCCTCTTCTTGCTCGGGTTTTACCGTCCTAGAAATATGAACTCTTCATTTTTAGCAGTGTGGTTGTATGGAGAAATGGAGCCGGTGTGGATCGCCAACAGAAACTCTCCAATTCCCAACAATATCTCTGGCTTGTTATTCCTAACAATTGATGGCAATGGAAGCTTGAAAATTACCACCAGAGGAGGGGGAGGAGATGGGTACTCTTTTTCACTCTTTGATGTTGAAGAAGCAACTAATACCACTGCCATTTTGCTGGAAAGTGGCAACTTTGTGCTGAGAGAAATCGACCGGAGCGGGTCGGAAAAGCGGCAATTGTGGCAGAGCTTTGATCATCCAACGGATACTCTTCTTCCCGGAATGAAACTTGGGATCAATCACAAGACTGGATCCAGTTGGTCTCTAACATCTTGGAAAAGTTCAAACTCTCCCCTATCCGGAGCTTTTACACTTGCGGTGGATCCCAATAATACAAACCAACTAGTGATGTTGCTACGAGGAGACGTCTTCTGGAGAAGCGGAAATTGGGTTAGTGGTGTTTTCGAGTTCTCAAAACAACTATCAAATGCTGATGATAACTACTCTTTCCAGCGTTTCTCGGATGGGAATGACTACTTCTCTTTCCAGCGTTTTTCGAATGAGAATGAAACGTATTTTACATATTCTACCATCCGCCAATATCAATCCATAAGTGTGGATATGGCACACAGGTTAAGATTGGATGCTTCAAGTAATTTAATTTGGAGTAAAAATAGAGGAGGAGGAATACTAACTCCATGTCCTCAGCTCATCGGAGACGAGGGGTATGATTCTTTTAAACCAGATGCAGCCTGCATGTGGAATGATAACAGGAACAATACAATCCTCAGATGCCCAAATTCCCCAAATTCATTTTCACGAACACATGGTTTTGTGGAAGGAAATATTAGTTCCAAGTACAACGAAACAGAGAGCATGACACATTTTGAATGTCGAAAAACATGCCTTTCTGATTGCGATTGTGCTGCATATACCTTTTCATATGAAGTTGGCACTGGCTGCAAGATTTGGACCAGAGGATCAGCAATTTTGAGATATTATCCGCAGGGAAATAATGGACCGATTTGGTACTTTGCCTGGATGATTGAATTTGATCCAAAGAGAAGGGATGCAAGAAAGTTTAGGCATAGGATGGCGATTGTTTTTGGTGTGACAGGAGCTACAGTCATTATTCTGTTTGGTTTTATTTTCTATCTCAAATGGAAGATGCATATAGTGAAAGTAATAAGATGGATAATAAAGAAAAGTTCAGAAGAACAAACATTATTATCTGAGCTAGGAGTCAGAGTCAAAAGTTTTAACTTTCTAAAAAGAAAGAATAGAGGGAGAGGAGAAGGAAAGAGGAGGTCCAATCTACAATTTTACAGCTTTGAAAGTATAGTGGCTGCTACAAACAATTTTTCAGTTGAAAACAAGCTTGGAGAAGGTGGGTTTGGCCCTGTCTATAAGGGAAGATTGTTTGATGGCCAAGCAGTAGCAATCAAAAGGCTATCAAAGAATTCTGGGCAAGGATCAGAGGAATTCAAGAATGAAGCTATGATAATTGCAGAATTGCAACATACTAATTTGGTTAAGCTTGTTGGTTGCTGCATTTATAGAGAAGAGAGGTTGCTGATATATGAGTACTTGCCCAACAAAAGCCTTGACTTCTTTCTATTTGATCAAGAGAAGAAAATATTACTAGATTGGAACAAACGTTTCTACATAATTCAAGGAATCGTTCAAGGACTTCTGTATCTTCATAACTATTCAAGATTGCGAATAATTCACAGGGATTTAAAAGTCAGCAATATTTTACTTGATGATGAGATGAATGCAAAAATATCAGATTTTGGTATGGCTAGAATCTTTGAGTCGACTGATTGTGAAGCAAACACAAGACGGGTAGTTGGGACGCCTGGCTATATGTCTCCCGAGTATTTAATAGAGGGCGTTTTCTCAACAAAGTCAGATGTCTACAGCTTCGGAGTATTGCTGTTGGAAATTGTAACGGGGCAGAGGAATTACAAGAATTATGATGTTGAACACCCTCTCAATCTCATAGGTTATGCATGGGAATTATGGATTGACGGTAGGGGTCAAGAGCTAATTGAATCAACTTTATGCAACTCAAATCACGCATCAAAAGCTTTGAGATTCATTCATATTAGTCTTTTGTGCGTCCAACAAATCCCAGATGATAGACTCACCATGTTAGATATCATATTCATGATATACAATGATACTACCCACCTTCCACAGCCAAAACCTCCAGGGTTTTATACAGGAAGAAACTCACAGCCATCTAAACGTGAAATTTATTCGTCGAACGAGATGTCGACTTCAGAGATGATGACTAGGTGA 2553 39.76 MAASSTSIRMKLFFLYFSCCLCFILLFSVEFSDCQSNDNALAQYQELRDGSMLVSANGLFLLGFYRPRNMNSSFLAVWLYGEMEPVWIANRNSPIPNNISGLLFLTIDGNGSLKITTRGGGGDGYSFSLFDVEEATNTTAILLESGNFVLREIDRSGSEKRQLWQSFDHPTDTLLPGMKLGINHKTGSSWSLTSWKSSNSPLSGAFTLAVDPNNTNQLVMLLRGDVFWRSGNWVSGVFEFSKQLSNADDNYSFQRFSDGNDYFSFQRFSNENETYFTYSTIRQYQSISVDMAHRLRLDASSNLIWSKNRGGGILTPCPQLIGDEGYDSFKPDAACMWNDNRNNTILRCPNSPNSFSRTHGFVEGNISSKYNETESMTHFECRKTCLSDCDCAAYTFSYEVGTGCKIWTRGSAILRYYPQGNNGPIWYFAWMIEFDPKRRDARKFRHRMAIVFGVTGATVIILFGFIFYLKWKMHIVKVIRWIIKKSSEEQTLLSELGVRVKSFNFLKRKNRGRGEGKRRSNLQFYSFESIVAATNNFSVENKLGEGGFGPVYKGRLFDGQAVAIKRLSKNSGQGSEEFKNEAMIIAELQHTNLVKLVGCCIYREERLLIYEYLPNKSLDFFLFDQEKKILLDWNKRFYIIQGIVQGLLYLHNYSRLRIIHRDLKVSNILLDDEMNAKISDFGMARIFESTDCEANTRRVVGTPGYMSPEYLIEGVFSTKSDVYSFGVLLLEIVTGQRNYKNYDVEHPLNLIGYAWELWIDGRGQELIESTLCNSNHASKALRFIHISLLCVQQIPDDRLTMLDIIFMIYNDTTHLPQPKPPGFYTGRNSQPSKREIYSSNEMSTSEMMTR 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10162714 10166354 + evm.model.ptg000015l.1383 HCH4g1383 543627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1383 850 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 823 - -
HCH4g1383 850 SUPERFAMILY Protein kinase-like (PK-like) 520 829 IPR011009 -
HCH4g1383 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 501 612 - -
HCH4g1383 850 SMART blect_4 44 170 IPR001480 -
HCH4g1383 850 Gene3D Transferase(Phosphotransferase) domain 1 613 815 - -
HCH4g1383 850 MobiDBLite consensus disorder prediction 819 850 - -
HCH4g1383 850 SMART ntp_6 350 431 IPR003609 -
HCH4g1383 850 Pfam PAN-like domain 373 409 IPR003609 -
HCH4g1383 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 658 670 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1383 850 Gene3D Phosphorylase Kinase; domain 1 512 612 - -
HCH4g1383 850 SMART serkin_6 537 788 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1383 850 MobiDBLite consensus disorder prediction 823 850 - -
HCH4g1383 850 Pfam D-mannose binding lectin 86 196 IPR001480 -
HCH4g1383 850 PIRSF SRK 9 850 IPR024171 GO:0004674(InterPro)
HCH4g1383 850 Gene3D - 32 168 IPR036426 -
HCH4g1383 850 Pfam Protein tyrosine and serine/threonine kinase 539 749 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1383 850 ProSiteProfiles Bulb-type lectin domain profile. 38 163 IPR001480 -
HCH4g1383 850 CDD B_lectin 47 170 IPR001480 -
HCH4g1383 850 ProSiteProfiles PAN/Apple domain profile. 348 421 IPR003609 -
HCH4g1383 850 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 200 IPR036426 -
HCH4g1383 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 613 818 - -
HCH4g1383 850 ProSiteProfiles Protein kinase domain profile. 537 810 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1381 HCH-Chr4:10136416 HCH4g1383 HCH-Chr4:10162714 2.60E-43 dispersed
HCH4g1383 HCH-Chr4:10162714 HCH4g1385 HCH-Chr4:10174695 4.30E-151 dispersed
HCH4g1382 HCH-Chr4:10155199 HCH4g1383 HCH-Chr4:10162714 2.00E-257 tandem
HCH4g1383 HCH-Chr4:10162714 HCH4g1384 HCH-Chr4:10170877 4.40E-273 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81472 PF07714 PK_Tyr_Ser-Thr 2.20E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1383 - - - 0.0