Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1384 ATGCTAATGGCTGCTGCCGCTGCCATTGGAATAGTAAGAAAGTTTCAATCATTACGTTTTTTCTTCTTCTTATTCATTCCATTATTGTTTATGGAGTTTCCTTCTTGCCAATCTATGGGTGAATTAGCTCAATTTCAAGATTTAACAGATGGGTCTGAGTTAATCTCACCAACTGGGGTTTTTGCGTTAGGGTTTTATAGAATTAGACATTTGGGTACTAAGTTTTTAGCTATATGGTATAATGGAGAATCAGAACCGGTTTGGATTGCTAACAGGAATTCTCCAATTCCCAGCATTTCTGGCTTGTTGATTCTTACTATTGACGGTAATGGAAGCTTGAAAATTGCTACTAGAGGAGGAGAGGGGAATGGTTATTCTTTTTCTCTTTCAATTTATGATGTTGAAGAACCTATGAATACTAGTGCTAGGTTGCTTGATAATGGTAACTTTGTATTGAATGAACTTAACCCGGATGGGTCGGTTAGGCGGCGGCTATGGCAAAGTTTTGATTACCCAACGGATACTCTTCTTCCCGGGATGAAAATTGGGATTAATCATAAGACTGGATTCATTTGGTCTTTGGCATCTTGGAGAGGTATAAATTCTCCTCTCTATGGAGCTTTTACACTTGCTATGGATCCTAATAATACTAACCAATTAGGGATATTTCTTCGGAGAGACGTCTTTTGGACAAGCGGAAATTGGTTAGATGGTGGTTTTGAGCTCTCGAAACAATTATCGAGTATTGATAATGAGTACTTCTATTTTGAAAGGTTTTCTGATGAGAATGAAACTTATTTCACTTATAATTCCACCACACATGATAGTCATTCCCCAATGGGAGGAGAGTCATTGCCTAAGTTAAGATTGGATTCTGAGGGAACTTTTAGATGGAGTGATACTGAAAGGGGAGTTTCATGCCCTTTCTATGAAGATGAGGGCTTTCCTTTCAGTTCCTTTGACGCAAAACAAGATGCATCTTGTGTGGGGAAAAGGCAACATAAACTTCCTGTGTGTAGGAATTCGTTCAAAAAGGGTTTAAGTTACCACTTGGATTTTGGTTACATGGAGGGATTGAGTTTTAGGTACAGAGAAAGTGATAATATGACAATGTATGAATGTGAAAAGATATGTGTTTCTGATTGTGATTGCGTTGCTTATGCTCCTACACATGAGATAGAAGGTATTGGCTGCGAGATTTGGCGTAAAGGAACAACTTTTCGATCTCAGATTGGCGGGCGTCAGATTATGATGTTTTCTACCGATAACAGAGGTGAATCAAGGCTTTGGGTATGGATTGTTATTGGCCTGACAGGAGCTGCAGCCATTCTTTTGCTGTGTTTTATTTTCTATTTGAAAGTAATAAGAAAGATGAGAGGGAAGGGTCCAGAGGAACAGACATTGCTGAATGAGTTAGGAATCAGATATAAAAGTCTTAACTTTCTGAGAAGAAAAAACAGAGAAAGAGAAGATGGGAAGAAGAACCACAATCTAAAGTTTTACAGCTTTGAAATCATAGCTGCTGCTACAAACAATTTTTCAGCTGAAAATAAGCTTGGAGAAGGCGGGTTTGGCATGGTTTATAAGGGAAAATTGCCCAATGGCCAAGAAGTAGCAATTAAAAGACTCTCAAAGAATTCTAGGCAAGGATTGGAAGAGTTTAAGAATGAAGTTGTAATAATTGCTGAACTGCAACACACTAATTTGGTCAGGCTTGTTGGTTGCTGTATTTTTAAAGAAGAGAGGTTGCTAATATATGAGTACATGCCCAACAAAAGCCTAGACTTCTTCCTATTTGATTCAGAGAAGAAGATAATGCTAGATTGGAACAAACGCATCAACATAATCCAAGGAATTATTCAAGGACTTCTTTATCTTCATAATTATTCGAGATTACGAATAGTTCATAGAGATTTAAAAGTTAGTAATATTTTACTTGATGATGAGATGAATGCAAAAATATCAGATTTTGGTATGGCTAGAATCTTCGGGTCAACTGATTGTGAAGCAAACACTAAAAGAGTAGTCGGTACTTATGGCTATATGTCTCCCGAGTACGTGACAAATGGTGTTTTCTCAACAAAGTCAGATGTATATAGCTTCGGAGTTGTGCTATTGGAAATCTTAACTGGGCAAAAAAATTACAACAATCCCGATCTCGAAGATCCTCACAACCTCACAAGTTATGCATGGGAGTTATGGGTTGATGGTCGAGGTGTGGAACTAATTGACTCGACTTTACGCAATTCAAATCAGGAGTCGAAAGCTTTGAGGTGTTTTCATATCAGTCTTTTGTGTGTCCAACAAATCCCTACTGATAGACCCAGCATGTTAGATATCATATTAATGATACACAATGATGTTGCTCAACTTCCAACTCCAAAACCTCCTGCATTTTTTATCAGGAATAACTCAAGATCATCCAGGGCAATGGTGATAGGTGGTGAGACCAAAATTGAAATATGGTCAGAAAACAAGATGTCAATTTCAGAGATGATTGCTAGGTGA 2508 37.88 MLMAAAAAIGIVRKFQSLRFFFFLFIPLLFMEFPSCQSMGELAQFQDLTDGSELISPTGVFALGFYRIRHLGTKFLAIWYNGESEPVWIANRNSPIPSISGLLILTIDGNGSLKIATRGGEGNGYSFSLSIYDVEEPMNTSARLLDNGNFVLNELNPDGSVRRRLWQSFDYPTDTLLPGMKIGINHKTGFIWSLASWRGINSPLYGAFTLAMDPNNTNQLGIFLRRDVFWTSGNWLDGGFELSKQLSSIDNEYFYFERFSDENETYFTYNSTTHDSHSPMGGESLPKLRLDSEGTFRWSDTERGVSCPFYEDEGFPFSSFDAKQDASCVGKRQHKLPVCRNSFKKGLSYHLDFGYMEGLSFRYRESDNMTMYECEKICVSDCDCVAYAPTHEIEGIGCEIWRKGTTFRSQIGGRQIMMFSTDNRGESRLWVWIVIGLTGAAAILLLCFIFYLKVIRKMRGKGPEEQTLLNELGIRYKSLNFLRRKNREREDGKKNHNLKFYSFEIIAAATNNFSAENKLGEGGFGMVYKGKLPNGQEVAIKRLSKNSRQGLEEFKNEVVIIAELQHTNLVRLVGCCIFKEERLLIYEYMPNKSLDFFLFDSEKKIMLDWNKRINIIQGIIQGLLYLHNYSRLRIVHRDLKVSNILLDDEMNAKISDFGMARIFGSTDCEANTKRVVGTYGYMSPEYVTNGVFSTKSDVYSFGVVLLEILTGQKNYNNPDLEDPHNLTSYAWELWVDGRGVELIDSTLRNSNQESKALRCFHISLLCVQQIPTDRPSMLDIILMIHNDVAQLPTPKPPAFFIRNNSRSSRAMVIGGETKIEIWSENKMSISEMIAR 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10170877 10173944 + evm.model.ptg000015l.1384 HCH4g1384 543628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1384 835 ProSiteProfiles Protein kinase domain profile. 513 788 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1384 835 PIRSF SRK 12 835 IPR024171 GO:0004674(InterPro)
HCH4g1384 835 Pfam D-mannose binding lectin 87 198 IPR001480 -
HCH4g1384 835 SMART blect_4 45 172 IPR001480 -
HCH4g1384 835 Pfam Protein kinase domain 514 780 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1384 835 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 44 797 - -
HCH4g1384 835 Gene3D Transferase(Phosphotransferase) domain 1 589 791 - -
HCH4g1384 835 ProSiteProfiles Bulb-type lectin domain profile. 39 165 IPR001480 -
HCH4g1384 835 CDD B_lectin 46 172 IPR001480 -
HCH4g1384 835 ProSitePatterns Protein kinases ATP-binding region signature. 519 541 IPR017441 GO:0005524(InterPro)
HCH4g1384 835 SUPERFAMILY Protein kinase-like (PK-like) 497 805 IPR011009 -
HCH4g1384 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1384 835 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 199 IPR036426 -
HCH4g1384 835 Pfam PAN-like domain 367 403 IPR003609 -
HCH4g1384 835 SMART serkin_6 513 788 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1384 835 Gene3D - 37 169 IPR036426 -
HCH4g1384 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 589 794 - -
HCH4g1384 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 479 588 - -
HCH4g1384 835 Gene3D Phosphorylase Kinase; domain 1 486 588 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1382 HCH-Chr4:10155199 HCH4g1384 HCH-Chr4:10170877 4.20E-263 dispersed
HCH4g1384 HCH-Chr4:10170877 HCH6g0718 HCH-Chr6:40666946 4.80E-131 dispersed
HCH4g1383 HCH-Chr4:10162714 HCH4g1384 HCH-Chr4:10170877 4.40E-273 tandem
HCH4g1384 HCH-Chr4:10170877 HCH4g1385 HCH-Chr4:10174695 6.60E-173 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81473 PF00069 Pkinase 5.10E-50 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1384 - - - 0.0