Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1385 ATGGCTTCCAGAAGCAAAACCCAGTTCCTTTTCGTCATTGCTTTTCTAATTTTAAACCCTTCATTGCAATCATCTCCCTTGCTTCAAAACCAGAAACTTAAGATTGGGGATTATCTACTCTCACCTTCCGATTTATTCAGCCTCGGATTCGCGACTTTCGGGGATTCAAAAGCTTACTATCTGACCATTTTTCGAATCCTGGAGGAAGGTGGGAGAAGGCAGGTTTGGATTGCCAATCGTGAAAACCCTAACCCTAACCTTAGAATGGACAATTCTGTAGCTCTTACAATTGATGATTCTGGGACCTTCAAAATTTTGAATAGTAGAAATGATTCTATTGTTTTGTATTCAGGTGAGGGAGTGAGAATGGGAAGATCGATTAGTGCTGTTTTGATGGATTCTGGAAATTTGGTACTCAGAGAATTGAATTCAGATGGGTCTGTAAAGACAGATTTGTGGCAGAGCTTTGAGAATCCGTCGGATACTTTACTGCCTGGAATGAAGCTTGCGATTGACTATCAAAATGGGGTTTCTTCATATTTGACATCATGGGGAGGGTCGGTTCCGACATCGGGGTCGTTTATGTTCGGATTGGATCCGAAAGGGATCGACCAATTGGTCATTTTGTTGAGGGGGGAGATTTATTGGACTAGTGGGAGATTGAAGGATGGGCATTTTAATTCATCCTCTGTGTTTTCTAGGACATTTGATAACTTGTTTAAGTTTAGTGGAGGTGAAGTCTATTATAGTGATTCCAAGTCTGTGGGAGACAATGTCCCAATGTTAATGATAGATGTATGGGGTAGACTATGGAGTTTCCAGTTTGGAAAAATGGATTTAGTGGTTTCATGCTTGTCTTCTTTATCTTCTCCTTCGACTCTTTCTTTGAGTGAAGGGTGCTCGCTGAGAGTCATTCCTGATTGCCGGAGCTCAACCGAGAAGTTCTTGCCAAAGGTGGGTGTCATGTCCAGCCATGGTTTCAAGTTCCCGCAGAGTTACAACCACACCATCTATGATTGTCAGACCAAATGCTTGGGCAATTGTTCTTGTATTGCTTTTGCTTCTAAAAACGGCACTGACTGCGAGATATGGCGCAAGCAAACAAGTTTTATAGACAGAGCTACTGCAGATGGAGGAAGAGAAATATATGTACTAAGCTTTGAACATGAAGAGTACAAGTGGTGGTTATGGCTGATCCTTGGTGTTGCAGTTGGTCTTCTTGTTCCCTTCTTATTCTCATTTTGCTATATATTGTTGGATATTGTCAAACGGAAATGGAAAAGTGAAAGGAAACAGAAGAAACTGCTTTTTGAAATTGTTGGAGATGCCATGTCCTCATTGACAAAATATAAGAGACACCGCAAGACAGCTCATGATTTGCAGATATTCAGCTTCGAATGCGTTGTTGCTGCCACTAACAATTTCTCAGTTGCAAACAAGCTTGGACGGGGTGGCTATGGATCAGTTTATAAGGGAATGCTGTTTGATGGCCAAGAAATAGCAATAAAAAGACTCTCAAGAAATTCAGGGCAAGGTTTGGTAGAGTTCAAGAATGAAGCAACTGTCATTGCTAAACTCCAGCATACCAATCTTGTCAGGCTGTTTGGATTCTGTATCCAGGAGGAAGAAAAAATATTAATCTACGAGTATATGCCAAATAAAAGCTTAGACTTCTTTCTTTTCGATTCCTTCAGAAGGGAGCAACTGAACTGGGATAAGCGCTTCAGCATCATCGAAGGCATTGCTCAAGGACTTGTTTATCTTCATAAATATTCGAGATTGAAAGTAATTCACAGAGACTTGAAAGCAAGTAATATTCTACTAGACGATAATATGAATCCAAAAATTTCGGATTTCGGTATGGCTCGCATATTGGGATTGAAGGAATTTGAGTCAAACACTAGGAGAATTGTTGGAACACTGGGTTATATGCCGCCAGAGTATGCTTCCCGAGGCATTGTCTCAACAAAAACCGATGTATTCAGCTTTGGAGTTTTGCTTCTAGAGATTGTGAGTGGAATGAGAAATAATAACTGCCATTTGTCTGATGATCAACTCAATCTAATTGGTGTGGCTTGGAAATTCTGGAAGGAAGGTAGATGCTTTGAGTTAATTGACCCAACTTTAATGGCTGGATCATATCAAGCTAATGAAATACTGAGATGCATCCATGTGGGTCTGTTGTGTGTGCAAGACCATGCTTCCGATAGACCTGTCATGACTGATGTCGTTTCGATGCTTTTGAATGAAGCCGCCCAACTTTGTCCGCCTAAGCAGCCGGCATTCTACATTCATGACACGGTTGCGGAGGTGGCTGAAAACAAGGTAGAAAGATGTTCAACAAACTACCTTACAATTTCAGTGATTGACGCTAGATGA 2379 41.07 MASRSKTQFLFVIAFLILNPSLQSSPLLQNQKLKIGDYLLSPSDLFSLGFATFGDSKAYYLTIFRILEEGGRRQVWIANRENPNPNLRMDNSVALTIDDSGTFKILNSRNDSIVLYSGEGVRMGRSISAVLMDSGNLVLRELNSDGSVKTDLWQSFENPSDTLLPGMKLAIDYQNGVSSYLTSWGGSVPTSGSFMFGLDPKGIDQLVILLRGEIYWTSGRLKDGHFNSSSVFSRTFDNLFKFSGGEVYYSDSKSVGDNVPMLMIDVWGRLWSFQFGKMDLVVSCLSSLSSPSTLSLSEGCSLRVIPDCRSSTEKFLPKVGVMSSHGFKFPQSYNHTIYDCQTKCLGNCSCIAFASKNGTDCEIWRKQTSFIDRATADGGREIYVLSFEHEEYKWWLWLILGVAVGLLVPFLFSFCYILLDIVKRKWKSERKQKKLLFEIVGDAMSSLTKYKRHRKTAHDLQIFSFECVVAATNNFSVANKLGRGGYGSVYKGMLFDGQEIAIKRLSRNSGQGLVEFKNEATVIAKLQHTNLVRLFGFCIQEEEKILIYEYMPNKSLDFFLFDSFRREQLNWDKRFSIIEGIAQGLVYLHKYSRLKVIHRDLKASNILLDDNMNPKISDFGMARILGLKEFESNTRRIVGTLGYMPPEYASRGIVSTKTDVFSFGVLLLEIVSGMRNNNCHLSDDQLNLIGVAWKFWKEGRCFELIDPTLMAGSYQANEILRCIHVGLLCVQDHASDRPVMTDVVSMLLNEAAQLCPPKQPAFYIHDTVAEVAENKVERCSTNYLTISVIDAR 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10174695 10177797 - evm.model.ptg000015l.1385 HCH4g1385 543629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1385 792 Gene3D Transferase(Phosphotransferase) domain 1 551 756 - -
HCH4g1385 792 CDD STKc_IRAK 481 747 - -
HCH4g1385 792 SMART blect_4 30 159 IPR001480 -
HCH4g1385 792 ProSiteProfiles Bulb-type lectin domain profile. 24 152 IPR001480 -
HCH4g1385 792 ProSitePatterns Protein kinases ATP-binding region signature. 481 503 IPR017441 GO:0005524(InterPro)
HCH4g1385 792 Gene3D Phosphorylase Kinase; domain 1 448 550 - -
HCH4g1385 792 SMART serkin_6 475 747 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1385 792 CDD B_lectin 30 159 IPR001480 -
HCH4g1385 792 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 441 550 - -
HCH4g1385 792 PIRSF SRK 1 277 IPR024171 GO:0004674(InterPro)
HCH4g1385 792 PIRSF SRK 277 792 IPR024171 GO:0004674(InterPro)
HCH4g1385 792 ProSiteProfiles Protein kinase domain profile. 475 762 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1385 792 Gene3D - 21 156 IPR036426 -
HCH4g1385 792 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 146 763 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH4g1385 792 Pfam Protein tyrosine and serine/threonine kinase 477 679 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1385 792 ProSiteProfiles PAN/Apple domain profile. 308 387 IPR003609 -
HCH4g1385 792 Pfam D-mannose binding lectin 75 184 IPR001480 -
HCH4g1385 792 SUPERFAMILY Protein kinase-like (PK-like) 453 747 IPR011009 -
HCH4g1385 792 Pfam PAN-like domain 333 367 IPR003609 -
HCH4g1385 792 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 551 755 - -
HCH4g1385 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 596 608 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1385 792 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 186 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1383 HCH-Chr4:10162714 HCH4g1385 HCH-Chr4:10174695 4.30E-151 dispersed
HCH4g1385 HCH-Chr4:10174695 HCH6g0718 HCH-Chr6:40666946 7.80E-139 dispersed
HCH4g1384 HCH-Chr4:10170877 HCH4g1385 HCH-Chr4:10174695 6.60E-173 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81474 PF07714 PK_Tyr_Ser-Thr 1.20E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1385 - - - 0.0