Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1388 ATGGATTTCTGGCCAGAGTTTCTTGCAAGCAGTTGGGGTAAAGAATTTGTATCTGGTGGTTTTGGAGGCGTTGCTGGCATTATCTCTGGTTATCCTCTTGATACTCTTCGTATTAGGCAACAGCAAGCCATTTCTGATTCAGCTATTAGAATCTTCAGAAATATCATTGCTAATGATGGACTTTCTGGCCTTTATAGAGGCATGGCTGCTCCCTTGGCTTCTGTCACTTTTCAGAACGCTGCTGTGTTTCAGATCTATGCCGTGCTATCTCGCACGTTCGACTCGTCTCAATCGAGCACGAGCATGGATCCTCCTACTTATAGAGCTGTGGCTTTTGGAGGAATTGGTACTGGGGCTCTTCAGAGTTTCATCCTGTCTCCTGTGGAACTAGTGAAGATTCGTCTCCAGCTGCAGAGTTCAAAACCTGGAGAATTGAAACAATCTGTACCTTACGGAGGTCCTGTTAGTGTTGCCAAAAGCATATACAAAACAGAAGGACTGAGAGGGATTTACCGAGGTCTTACAATAACTATGCTCCGGGACGCACCGGCGCACGGCATCTACTTCTGGTCGTATGAGTGTATGAGAGAAAAGTTCCATCCGGGCTGCAGAAAGAAAGGCCAAGAGAGCCTTAGCACAATGTTGGTTGCCGGAGGGCTCGCGGGAGTCGCTAGCTGGGTATTCTGTTATCCGTTGGATGTTTTGAAGACAAGAATCCAGGCTCAGTCACAATCATCCTCCAAGAAGTACAGTGGAATTGTTGATTGTCTTTGCAAGAGTGTGAGAGAAGATGGATATAGAGTGCTCTGGAGGGGGCTTGGGACTGCAGTTGCTAGAGCATTTGTGGTAAATGGTGCTATTTTCTCTGCTTATGAGATAACTTTGAGGTGTTTATTTAGCAATGGAAGCAATCAGCAAGAACATTGA 927 45.95 MDFWPEFLASSWGKEFVSGGFGGVAGIISGYPLDTLRIRQQQAISDSAIRIFRNIIANDGLSGLYRGMAAPLASVTFQNAAVFQIYAVLSRTFDSSQSSTSMDPPTYRAVAFGGIGTGALQSFILSPVELVKIRLQLQSSKPGELKQSVPYGGPVSVAKSIYKTEGLRGIYRGLTITMLRDAPAHGIYFWSYECMREKFHPGCRKKGQESLSTMLVAGGLAGVASWVFCYPLDVLKTRIQAQSQSSSKKYSGIVDCLCKSVREDGYRVLWRGLGTAVARAFVVNGAIFSAYEITLRCLFSNGSNQQEH 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10190319 10191469 + evm.model.ptg000015l.1388 HCH4g1388 543632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1388 308 Pfam Mitochondrial carrier protein 110 200 IPR018108 -
HCH4g1388 308 Pfam Mitochondrial carrier protein 209 299 IPR018108 -
HCH4g1388 308 Pfam Mitochondrial carrier protein 11 93 IPR018108 -
HCH4g1388 308 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085(InterPro)
HCH4g1388 308 PRINTS Mitochondrial carrier protein signature 120 138 IPR002067 GO:0055085(InterPro)
HCH4g1388 308 PRINTS Mitochondrial carrier protein signature 218 240 IPR002067 GO:0055085(InterPro)
HCH4g1388 308 PRINTS Mitochondrial carrier protein signature 171 189 IPR002067 GO:0055085(InterPro)
HCH4g1388 308 Gene3D Mitochondrial carrier domain 14 308 IPR023395 -
HCH4g1388 308 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 8 298 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
HCH4g1388 308 ProSiteProfiles Solute carrier (Solcar) repeat profile. 209 297 IPR018108 -
HCH4g1388 308 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 92 IPR018108 -
HCH4g1388 308 ProSiteProfiles Solute carrier (Solcar) repeat profile. 105 198 IPR018108 -
HCH4g1388 308 SUPERFAMILY Mitochondrial carrier 11 292 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0073 HCH-Chr11:1049460 HCH4g1388 HCH-Chr4:10190319 1.70E-25 dispersed
HCH4g1388 HCH-Chr4:10190319 HCH5g0090 HCH-Chr5:560737 1.30E-20 dispersed
HCH10g1285 HCH-Chr10:45267068 HCH4g1388 HCH-Chr4:10190319 3.80E-21 transposed
HCH8g1247 HCH-Chr8:47775142 HCH4g1388 HCH-Chr4:10190319 1.50E-25 transposed
HCH4g1388 HCH-Chr4:10190319 HCH6g0174 HCH-Chr6:2285486 1.40E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1388 K15109 - csv:101222165 487.263