Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1401 ATGGCCGTGGACATGTCTGAGAATCAGCCAGCTGCTCGACGTTTCAAGATTTTTCCTGCCTCTCCTACTCTCTCTCTTACCCTTGCTGGTGTTTTTGCAAATGCCGAGGTGGTTTCGGCGTCAGCATCGGATATGGATGTTGGTGGTGGTGGCGTGATGGGGAGAGAAGATAGCAGTGAGAATTCCGGGCAGGCGAGATCGAGATCCGTGGAGGATTTAGATGCCGACCCAGATGATGAAGATGAAGAAAGGCAAGGGATTGTTGGAAAGAAGAGGAAGAACAGACACACTTCTCACCAAATTAGAGAAATGGAGTTGTTATTCAAGGAATCGCCACATCCAGATGAGAAGCAGAGACAGTTACTAAGTGAGAAATTAGGGCTTTCTTCTAAGCAAATCAAGTTCTGGTTTCAGAATCGAAGAACTCAAATCAAGGCTATTCATGAACGCCATGAAAATACTATATTGAAAGCAGAAATGGAGAAACTGCGAGAAGAAAACAAGGCCATGAGAGAGACAATAAACAAAGGATTTTGTCGGAAATGTGGCTCTTCAAACTCCACAACCACTTCCAAAGAATCCAATTCCTCCACTGAACAACAAAAACTAAGAACTGAAAACTCTAAACTCAAAGCCGAGGTGGAAAAATTGCGAGAAGCTCTAAGAAAGTACGCTCCTCCGGGAACGTCTCCGTCGTGTTCGACGGAGAACGATGGCGAGATAGAGACGAGAAGTAGTGTCCCGAAATCGAAAAGGATATTCGGATTGGAGGAATCGAGAGTGATGGAGATAGCGAAACGAGCGACGGATGAGCTCGTTAAAATGGCCGACGCCGGCGAGCCGCTTTGGGTTCGAAGCGTTGAGACTGGGCGGGAATTACTTAATTACGACGTTTACGTGAAGGAATTCACCGCCGGAAAGAATGGCGATGAACGGCCGAAGAGAGCAATTGAAGCTTCGAGAGAATCTGGAGTTGTCTTCATTGATATTCACCGATTGGTTCAGAGTTTCATGGATGTGGTTCAATGGAAGGAAATGTTTCCATCAATAATCTCAAAAGCAACAACAATGGAGGTTATCAACAATGGTGATGGGGTCACTAGAAATGGTGCAGTTCAGCTGGTGTTTGTAGAGCTTCAAATGCTCACCCCCACGTTGCCCACAAGAGAGCTGTATTTCATCCGAAGTTGCAAGCAACTGAGTGCCGAAAAGTGGGCCATCGTTGATGTCTCCATCGACAAAGTGGGTGACAGTGAAGATTCCTCATCGTTCAGGTGTAGAAAACGTCCATCTGGTTGCATCATTGAAGATACATCTAATGGTCATTGTAAGGTAACTTGGGTGGAGCACTGGGAATGCCAAAAGAATGGACTTCGCACAATATACCGTACCATCATTAATAGTGGTTTAGTATTTGGAGCAAAGCATTGGATGGCTACACTGCAACTCCAATGTGAATGGCAGATTTTCTTTATGGCTACCAACGTTCCTATGAAGGATTCGACTGGAATCACCACTCTTAGTGGGAGGAAAAACATTCTCAAGTTGGCACAGAGAATGACATCTAACTTTTTTCAAGCAATTGGTGCATCAAGCAGCCATACATGGACCAAGGTCCCATGCAAAACGGGGGAAGACATACGGGTTGCTTCAAGGAAGAACTTGAATGACCCAAGAGAACCGATTGGTTTGATCTTGTGTGCAGTTTCATCTGTGTGGCTACCTGTTTCTCCTAAAGTCTTGTTTGAATTCTTAATAGACGAAACTCGCCGATCCGAGTGGGATATCATCTCAAGTGATGGTCCAGCAGAAATAATTGCAAACTTTGCCAAGGGACAGAATCGGGGTAATGCCGTTACTATACAAGCAATAAAATCAGATGAAAAAAAGATGTGGCTTCTTCAAGATAGTCTCATAAATGATTATGAGTCAATGGTAGTGTATGCTCAGGTCTACACGACCAGCATGCAGTCTGTCATGACCGGCTGCGACCCAGGCAACTTTACAATGTTGCCAACAGGCTTCTCAATCCTTCCAGATGGGCACCAGTCGAGGCCCCTAGTTATCACTTCTAGTAAAGAAGAGAAGGGGACAGAAGGAGGGTCATTGCTTACAATGGCATTCCAAATCCTAGCCGATCCCTCTCCCACAGCGGTAACGACCGTGCAGTGTGTGGAGTATGTTAACAATGTCATATCATGTACATTAAGAAATATTAGAACAAGCCTGCGATGTGAGGATGACTGA 2247 45.13 MAVDMSENQPAARRFKIFPASPTLSLTLAGVFANAEVVSASASDMDVGGGGVMGREDSSENSGQARSRSVEDLDADPDDEDEERQGIVGKKRKNRHTSHQIREMELLFKESPHPDEKQRQLLSEKLGLSSKQIKFWFQNRRTQIKAIHERHENTILKAEMEKLREENKAMRETINKGFCRKCGSSNSTTTSKESNSSTEQQKLRTENSKLKAEVEKLREALRKYAPPGTSPSCSTENDGEIETRSSVPKSKRIFGLEESRVMEIAKRATDELVKMADAGEPLWVRSVETGRELLNYDVYVKEFTAGKNGDERPKRAIEASRESGVVFIDIHRLVQSFMDVVQWKEMFPSIISKATTMEVINNGDGVTRNGAVQLVFVELQMLTPTLPTRELYFIRSCKQLSAEKWAIVDVSIDKVGDSEDSSSFRCRKRPSGCIIEDTSNGHCKVTWVEHWECQKNGLRTIYRTIINSGLVFGAKHWMATLQLQCEWQIFFMATNVPMKDSTGITTLSGRKNILKLAQRMTSNFFQAIGASSSHTWTKVPCKTGEDIRVASRKNLNDPREPIGLILCAVSSVWLPVSPKVLFEFLIDETRRSEWDIISSDGPAEIIANFAKGQNRGNAVTIQAIKSDEKKMWLLQDSLINDYESMVVYAQVYTTSMQSVMTGCDPGNFTMLPTGFSILPDGHQSRPLVITSSKEEKGTEGGSLLTMAFQILADPSPTAVTTVQCVEYVNNVISCTLRNIRTSLRCEDD 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10256039 10260751 - evm.model.ptg000015l.1401 HCH4g1401 543645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1401 748 SMART HOX_1 89 151 IPR001356 GO:0003677(InterPro)
HCH4g1401 748 Pfam Homeodomain 90 145 IPR001356 GO:0003677(InterPro)
HCH4g1401 748 FunFam Homeobox-leucine zipper protein GLABRA 2 263 486 - -
HCH4g1401 748 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH4g1401 748 MobiDBLite consensus disorder prediction 179 209 - -
HCH4g1401 748 CDD START_ArGLABRA2_like 259 486 - -
HCH4g1401 748 SUPERFAMILY Bet v1-like 509 713 - -
HCH4g1401 748 Gene3D - 76 162 - -
HCH4g1401 748 ProSiteProfiles START domain profile. 254 486 IPR002913 GO:0008289(InterPro)
HCH4g1401 748 SUPERFAMILY Bet v1-like 257 486 - -
HCH4g1401 748 SMART START_1 263 487 IPR002913 GO:0008289(InterPro)
HCH4g1401 748 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677(InterPro)
HCH4g1401 748 Coils Coil 146 176 - -
HCH4g1401 748 MobiDBLite consensus disorder prediction 224 246 - -
HCH4g1401 748 Pfam START domain 263 486 IPR002913 GO:0008289(InterPro)
HCH4g1401 748 MobiDBLite consensus disorder prediction 43 100 - -
HCH4g1401 748 SUPERFAMILY Homeodomain-like 88 146 IPR009057 -
HCH4g1401 748 FunFam Homeobox-leucine zipper protein HDG1 75 163 - -
HCH4g1401 748 MobiDBLite consensus disorder prediction 179 203 - -
HCH4g1401 748 Coils Coil 200 223 - -
HCH4g1401 748 CDD homeodomain 90 145 IPR001356 GO:0003677(InterPro)
HCH4g1401 748 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 79 745 IPR042160 -
HCH4g1401 748 Gene3D - 262 485 IPR023393 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1401 HCH-Chr4:10256039 HCH7g0229 HCH-Chr7:1529625 4.20E-134 dispersed
HCH4g1401 HCH-Chr4:10256039 HCH6g0168 HCH-Chr6:2233292 1.40E-235 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33516 PF01852 START 2.30E-54 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1401 K09338 - csv:101218545 1008.82