Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1415 ATGGCTTGGTTCACCATTGGAAGCTTTCAAGATTCTTTTAGCCCCCGCTCTTGCAAGGCTTACCTTGCAGAGTTCATCTCTACCTTGCTTTTTGTTTTCGCCGGCGTCGGTTCAGCCATTGCCTACAATAAGATAACATCCTCTGCAGCTCTTGATCCGGCTGGGCTGGTGGCTGTTGCTGTGTGTCACGGATTCGCTCTCTTTGTTGCCGTCTCGGTCGGTGCCAACATCTCCGGTGGTCATGTCAACCCGGCAGTCACATTCGGCCTTCTTCTAGGGGACCAAATCACCCTCCTTACCAGCATATTTTACTGGATTGCTCAGCTTCTTGGCTCCATTGTCGCTTGCTACCTTCTCAAATATGTCACTGGAGGCCTGGCAGTTCCCATCCACAGTGTGGCCGCAGGCATTGGAGCTGCTGAAGGAGTTGTGATGGAGATTGTCATCACCTTTGCTTTGGTTTATACTGTGTACGCAACAGCAGCTGACCCCAAGAAGGGATCATTGGGCACAATTGCACCCATTGCCATTGGCCTCATTATTGGAGCAAATATCTTGGCAGCCGGTCCGTTCTCCGGTGGATCGATGAACCCCGCCCGATCATTTGGACCAGCAGTGGTTAGCGGGGACTTCCACGACAACTGGATTTATTGGGTCGGGCCGCTCATCGGCGGTGGTTTAGCCGGGCTTATCTATTTCTATGCCTTCATGGCCTATGCACCTACTCCAATACCAAGTGATTTCTAA 747 51.67 MAWFTIGSFQDSFSPRSCKAYLAEFISTLLFVFAGVGSAIAYNKITSSAALDPAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLLLGDQITLLTSIFYWIAQLLGSIVACYLLKYVTGGLAVPIHSVAAGIGAAEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPIAIGLIIGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLIGGGLAGLIYFYAFMAYAPTPIPSDF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10392737 10393679 + evm.model.ptg000015l.1415 HCH4g1415 543659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1415 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
HCH4g1415 248 PANTHER AQUAPORIN-8 4 239 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
HCH4g1415 248 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g1415 248 SUPERFAMILY Aquaporin-like 13 243 IPR023271 -
HCH4g1415 248 Pfam Major intrinsic protein 15 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g1415 248 FunFam Probable aquaporin TIP1-1 2 247 - -
HCH4g1415 248 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g1415 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g1415 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g1415 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g1415 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g1415 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g1415 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g1415 248 Gene3D Glycerol uptake facilitator protein. 2 241 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1415 HCH-Chr4:10392737 HCH9g0550 HCH-Chr9:3606065 2.20E-76 dispersed
HCH5g0367 HCH-Chr5:2387645 HCH4g1415 HCH-Chr4:10392737 6.10E-98 transposed
HCH5g0726 HCH-Chr5:5267021 HCH4g1415 HCH-Chr4:10392737 2.00E-56 transposed
HCH4g0334 HCH-Chr4:2195407 HCH4g1415 HCH-Chr4:10392737 3.90E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1415 K09873 - csv:101218611 437.187