Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1420 ATGTCAAAGAGAAAGAATTCAGAGCCTGAAACCAATGGCAACTCCTATGATCATAAAAAAACTTCAGAAATCTCTCGGGCAGACGTTGAACCGGAATTCGTAGAATTTCCCGACCGGCCCACCAAGAGAGCTCGAGACAGTAACAAACATCCTGTTTTCCGTGGGGTACGGATGAGAAGCTGGGGAAAATGGGTGTCGGAAATCCGACAACCTCGGAAGAAATCTCGAATTTGGCTGGGCACGTTTTCGACACCCGAGATGGCGGCGCGTGCACATGACGTCGCGGCTCTGAGCATTAAAGGTGATTCCGCCATCCTCAATTACCCTCACCTAGCCGGAGTTTTACCTCGGCCGGTGTCGCTAATGCCGAGAGATATTCAAGCTGCCGCCACGAAAGCGGCAGCGATGGTCGATTTGAATTCCGCTACATCACCGACATCGTCTTCGTCTTCTTCTTCATCGAATGCGACGGAGCCGGAGGAGCTGAGTGAGATCGTCGAGTTGCCGAATATTGAAAACAGTTTTTGTAGTTCCGAGTGTTCTAAGAACGAGTTTACATTATTGACTGCTGAATCATGGGAATGGTGGGAGTACACGGCGGCGGGTTTCGGCCGAGATTATTCCGACCAGATATTGGAGGAGGAAAGTTTATTCCCGAGCAGCTTTTACGGTGCTTTGTGGGATTAA 687 49.93 MSKRKNSEPETNGNSYDHKKTSEISRADVEPEFVEFPDRPTKRARDSNKHPVFRGVRMRSWGKWVSEIRQPRKKSRIWLGTFSTPEMAARAHDVAALSIKGDSAILNYPHLAGVLPRPVSLMPRDIQAAATKAAAMVDLNSATSPTSSSSSSSSNATEPEELSEIVELPNIENSFCSSECSKNEFTLLTAESWEWWEYTAAGFGRDYSDQILEEESLFPSSFYGALWD 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10429685 10430371 + evm.model.ptg000015l.1420 HCH4g1420 543664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1420 228 MobiDBLite consensus disorder prediction 1 48 - -
HCH4g1420 228 MobiDBLite consensus disorder prediction 140 160 - -
HCH4g1420 228 Pfam AP2 domain 51 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1420 228 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1420 228 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1420 228 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677(InterPro)
HCH4g1420 228 MobiDBLite consensus disorder prediction 140 162 - -
HCH4g1420 228 SMART rav1_2 52 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1420 228 FunFam Ethylene-responsive transcription factor 2 51 110 - -
HCH4g1420 228 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1420 228 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1420 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 188 IPR051032 -
HCH4g1420 228 CDD AP2 53 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1420 HCH-Chr4:10429685 HCH6g1032 HCH-Chr6:45048249 1.10E-34 dispersed
HCH10g0484 HCH-Chr10:3943801 HCH4g1420 HCH-Chr4:10429685 3.60E-37 wgd
HCH4g0333 HCH-Chr4:2187450 HCH4g1420 HCH-Chr4:10429685 7.30E-42 wgd
HCH4g1420 HCH-Chr4:10429685 HCH6g0162 HCH-Chr6:2174343 3.40E-39 wgd
HCH4g1420 HCH-Chr4:10429685 HCH8g0715 HCH-Chr8:43891189 1.30E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33518 PF00847 AP2 4.00E-13 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1420 K09286 - csv:101217361 247.669