Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1429 ATGGCTATGTCCTGCAAGGATGGTAATAAACATGTTCTCGATAATGGCAAATATGTCAGATATACACCGGAGCAGGTTGAAGCTCTTGAAAGGCTTTATCATGAATGTCCAAAACCAAGTTCTATTCGTCGTCAGCAACTTATTAGAGAATGCCCGATTCTCTCTAATATTGAGCCTAAGCAAATCAAAGTTTGGTTTCAAAACAGAAGATGTAGAGAAAAACAGAGAAAAGAGGCATCAAGGCTACAAGCTGTGAATAGGAAGCTTACGGCTATGAATAAACTTTTAATGGAGGAGAATGATAGATTGCAGAAACAAGTCTCCCAGTTGGTGTATGAAAATGGTTATTTTCGCCAGCATACTCAAACTACAACGCTTGGAGCAAAAGACACAAGTTGTGAAGCGGTGGTAACAAACGGTCAACACAATTTGACATCTCAGCATCCTCCAAGGGATGCTAGTCCTGCTGGACTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAGATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCACGAGCCTGCGGCCTGGTGGGTCTAGAACCGACGAGAGTTGCTGAGATCCTCAAGGATCAGCCATCGTGGTTCCGTGATTGCCGAGCTGTGGATGTTCTGAATGTGCTGCCAACCGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTTTACGCACCTACTACATTGGCGCCTGCACGAGACTTCTGGTTGTTGCGCTACACTTCTGTTTTAGAAGATGGTAGCCTCGTGATTTGTGTGAGATCACTGAAGAACACTCAGAATGGTCCAACCATGCCCCCAGTGCAGCATTTTGTTAGAGCAGAAATGCTGCCCAGTGGCTACCTGATAAGACCATGTGAAGGGGGTGGTTCCATCATCCATATTGTCGATCATATGGATTTGGAGCCGTGGAGTGTTCCAGAAGTATTGCGCCCATTGTATGAATCATCGACTGTTCTTGCTCAAAAGATGACTATGGCAGCTCTTCGCCAGCTGAGGCAGATAGCTCATGAAGTTTCACAGTCAAGTGTAACAGGCTGGGGTAGACGCCCTGCAGCCTTACGTGCACTTGGCCAAAGGCTCACCCGGGGTTTTAATGAGGCACTTAATGGGTTCAACGACGAAGGATGGTCTGTGATGGGAAATGATGGCATGGATGATGTTACTATTCTTATAAATTCATCTCCTGACAAGCTAATGGGATTGAACATTTCATTCGCAAATGGATTTTCTGCCATCAGCAATGCAGTTTTATGTGCTAAAGCATCAATGCTGTTGCAGAATGTGCCTCCTGCAATTCTACTTAGGTTCCTGCGGGAGCACAGATCAGAATGGGCAGACAATAACATTGATGCTTATTCAGCTGCAGCCGTTAAGGTCGGCCCTTGGAGCTTACCAGGGTCTAGAGTTGGAAGTTTTGGTAATCAAGTAATTCTTCCACTGGCTCATACCATCGAGCACGAAGAGTTTCTTGAAGTGATTAAATTGGAAGGCGTTGGCCATTCTCCCGAAGATGCAATGATGCCTAGAGAAATGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAAAATGCTATAGGCACATGTGCTGAACTAATATTTGCTCCAATTGATGCCTCTTTTGCTGATGATGCACCTCTTCTACCTTCGGGATTTCGAATCATACCACTTGATTCTGGGAAGGAAGCATCCAGCCCTAATCGCACACTCGATCTTGCTTCTGCACTTGAAATTGGGTCTGCTGGCAATAGAGCATCAAACGACTCTGCAAATTCTGGTTGTACGAGGTCTGTAATGACAATTGCATTTGAATTTGCATTTGAGAGCCATATGCAAGAACATGTGGCATCAATGGCTCGGCAATACATTCGTAGCATTATATCATCAGTCCAGAGGGTTGCATTAGCTCTTTCACCTTCTCATTTAAGTTCACATGCTGGTCTGCGGTCTCCACTTGGTACTCCCGAAGCACAAACACTTGCTCGTTGGATATGCAATAGTTACAGGTGCTACTTGGGCGTGGAGCTGTTAAAATCTGGGAATGAAGGGGGTGAGTTTGTCCTGAAAACATTGTGGCATCACTCTGATGCAATCATGTGCTGCTCTCTAAAGTCTATGCAGGCATTGCCAGTTTTCACCTTTGCAAACCAGGCAGGCCTTGACATGCTTGAGACCACCTTAGTTGCCCTACAAGACATAACTTTGGAAAAGATATTTGATGACCATGGAAAGAAGACACTCTGCTCAGAATTTCCACAGATAATGCAACAGGGATTTGCTTGTCTTCAAGGAGGTATATGCCTATCGAGTATGGGCCGACCAGTCTCATATGAAAGAGCGGTGGCTTGGAAGGTGTTGAATGAAGAGGAAAATGCACACTGCATCTGCTTTATGTTTGTGAACTGGTCTTTTGTCTGA 2523 45.18 MAMSCKDGNKHVLDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQTTTLGAKDTSCEAVVTNGQHNLTSQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDQPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICVRSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTMAALRQLRQIAHEVSQSSVTGWGRRPAALRALGQRLTRGFNEALNGFNDEGWSVMGNDGMDDVTILINSSPDKLMGLNISFANGFSAISNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPWSLPGSRVGSFGNQVILPLAHTIEHEEFLEVIKLEGVGHSPEDAMMPREMFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGSAGNRASNDSANSGCTRSVMTIAFEFAFESHMQEHVASMARQYIRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLARWICNSYRCYLGVELLKSGNEGGEFVLKTLWHHSDAIMCCSLKSMQALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGKKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFMFVNWSFV 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10491100 10497148 + evm.model.ptg000015l.1429 HCH4g1429 543673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1429 840 CDD homeodomain 17 77 IPR001356 GO:0003677(InterPro)
HCH4g1429 840 CDD bZIP 69 108 - -
HCH4g1429 840 FunFam homeobox-leucine zipper protein ATHB-15 196 377 - -
HCH4g1429 840 ProSiteProfiles START domain profile. 151 379 IPR002913 GO:0008289(InterPro)
HCH4g1429 840 Gene3D - 195 376 IPR023393 -
HCH4g1429 840 Pfam MEKHLA domain 694 839 IPR013978 -
HCH4g1429 840 Coils Coil 72 113 - -
HCH4g1429 840 SMART START_1 160 370 IPR002913 GO:0008289(InterPro)
HCH4g1429 840 SUPERFAMILY Bet v1-like 160 371 - -
HCH4g1429 840 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677(InterPro)
HCH4g1429 840 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
HCH4g1429 840 Pfam Homeodomain 17 75 IPR001356 GO:0003677(InterPro)
HCH4g1429 840 Gene3D - 10 83 - -
HCH4g1429 840 Pfam START domain 161 369 IPR002913 GO:0008289(InterPro)
HCH4g1429 840 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 10 840 IPR044830 GO:0003700(InterPro)
HCH4g1429 840 SMART HOX_1 14 80 IPR001356 GO:0003677(InterPro)
HCH4g1429 840 SUPERFAMILY Homeodomain-like 16 80 IPR009057 -
HCH4g1429 840 CDD START_ArGLABRA2_like 155 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0744 HCH-Chr12:4735806 HCH4g1429 HCH-Chr4:10491100 0.00E+00 dispersed
HCH3g1240 HCH-Chr3:46484562 HCH4g1429 HCH-Chr4:10491100 1.80E-298 dispersed
HCH4g1429 HCH-Chr4:10491100 HCH14g1123 HCH-Chr14:38147369 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33520 PF01852 START 8.40E-54 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1429 K09338 - csv:101213106 1644.79