Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1441 ATGGGGAAGGCTACAAGATGGTTAAAGGGCTTATTGGGGATGAAGAAAGATAAGGACCCATCTGGGAATTCAAATCCAACAGCCGGAAAAGAGAAGAAAAGGTGGAGTTTTGCGAAATCCGGCAGAGATTCCGGCCAGGTAATTCAGAATCCGGCCACTGTCCCGGCTTCTGGTTGGCTGAGATCCTACATTTCTGATTCAGAGACAGAGCAGAACAAGCACGCTATTGCGGTCGCTGCAGCAACCGCCGCGGCCGCCGATGCCGCTGTCGCAGCGGCTCAGGCAGCGGTGGCGGTCGTGAGGCTGACGAGCAAGGGGAGAGGATCCAGGTACGGTGGTGGGCGAGATAGATGGGCAGCTGTGAAGATTCAGACAGTTTTCAGGGGCTATTTGGCTAGGAAGGCCCTGAGAGCTCTCAAAGGATTAGTCAAGTTACAGGCTGTTGTTAGGGGTTATCTGGTAAGGAAAAGGGCAGCTGCTACTCTGCATAGTATGCAAGCTCTCATTAGAGCGCAAACTGCGGTTAGGACTCAACGAGCCCGTCGATCTTTCAACAAAGAGAACAGGTTCATTCCTGATATTCGGCATCGAAAATCCTCTGATCGGTTCGACGAAACTAGAAGCGATTTCCATAGTAAGAGGTTGTCTACATCCTATGAAACTAGTCTCAATTCATTGGACGAGAGCCCGAAAATCGTCGAGATCGACACGTACAAGACCCGATCAAGGTCCCGAAGATTCTTCTCCGCTTTATCCGAGTGTGGAGATGATGTCCCTCTCCAAGCAATCTCTTCACCATTGCTGTGTCCAAATCGACCTCGTGTCTCTGTGCCCGAATGCCTTCAAGTTCGAGATTTTGAGTGGTGCTTGATGGGCGACGAATGCAAGTACCCTACGGCTCATAGCACGCCTCGGCTATCAAATTCATTTAGTTCAACGAATGTGCCAGTTACCCCATCAAAGAGTGTGTGTGGGGATCACAGCTTCTTCCAGCCATACTTAAACTTCCCAAATTATATGGCAAACACTCAATCATTCAGGGCCAAACTGAGGTCTCAAAGTGCCCCAAAGCAAAGGCCAGAACCAGGCTCTAAGAAAAGACTCTCCCTCAATGAAATCATGGCAGCAAGGAATAGCTTGAGTAGTGTAAGAATGCAGAGATCAAGTAACCAAATTCAAGAACAACAAGGATTTGGTTTTTAG 1203 49.04 MGKATRWLKGLLGMKKDKDPSGNSNPTAGKEKKRWSFAKSGRDSGQVIQNPATVPASGWLRSYISDSETEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSKGRGSRYGGGRDRWAAVKIQTVFRGYLARKALRALKGLVKLQAVVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSFNKENRFIPDIRHRKSSDRFDETRSDFHSKRLSTSYETSLNSLDESPKIVEIDTYKTRSRSRRFFSALSECGDDVPLQAISSPLLCPNRPRVSVPECLQVRDFEWCLMGDECKYPTAHSTPRLSNSFSSTNVPVTPSKSVCGDHSFFQPYLNFPNYMANTQSFRAKLRSQSAPKQRPEPGSKKRLSLNEIMAARNSLSSVRMQRSSNQIQEQQGFGF 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10632509 10634286 + evm.model.ptg000015l.1441 HCH4g1441 543685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1441 400 PANTHER IQ-DOMAIN 5-RELATED 6 388 - -
HCH4g1441 400 Pfam IQ calmodulin-binding motif 117 137 IPR000048 GO:0005515(InterPro)
HCH4g1441 400 Pfam IQ calmodulin-binding motif 143 157 IPR000048 GO:0005515(InterPro)
HCH4g1441 400 MobiDBLite consensus disorder prediction 9 46 - -
HCH4g1441 400 Pfam Protein of unknown function (DUF4005) 303 386 IPR025064 -
HCH4g1441 400 ProSiteProfiles IQ motif profile. 116 144 - -
HCH4g1441 400 ProSiteProfiles IQ motif profile. 164 193 - -
HCH4g1441 400 Gene3D - 59 141 - -
HCH4g1441 400 ProSiteProfiles IQ motif profile. 140 167 - -
HCH4g1441 400 SMART iq_5 138 159 IPR000048 GO:0005515(InterPro)
HCH4g1441 400 SMART iq_5 115 137 IPR000048 GO:0005515(InterPro)
HCH4g1441 400 MobiDBLite consensus disorder prediction 349 368 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1441 HCH-Chr4:10632509 HCH7g1248 HCH-Chr7:45340650 2.80E-28 dispersed
HCH5g1306 HCH-Chr5:49328618 HCH4g1441 HCH-Chr4:10632509 1.40E-160 transposed
HCH4g1441 HCH-Chr4:10632509 HCH6g0147 HCH-Chr6:1943850 1.90E-53 wgd
HCH4g1441 HCH-Chr4:10632509 HCH8g0696 HCH-Chr8:43669908 5.70E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1441 - - - 0.0