Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1454 ATGAAGAAGATGACAATGGGGACGTTAAGGAGTTTCCTGTTTGGTTTTCTGGGTGGTCTAGCTCTTCTACTTCATGTTCAAGCTCAGGATCAATCAGGGTTCATTAGCTTAGATTGTGGATCACCGGCGAATACGAGTTATACGGAAACGACGACGAGTATCAGTTATGTTTCTGATGCACCTTACATAAACAGTGGTGTAAGTGGTAGTGTAGATTCAGTGTATGGAAATACCTACCAAAGGCAAATGAGACTACTTAGAAGCTTTCCTGAAGGAATCAGAAACTGTTACAATGTAAGTGTTAAAAAGAACACCAAATACTTGATTCGAGCAAGTTTCTTGTATGGGAACTATGATGGGTTGAGTTCTCTGCCAAAGTTTGATCTCTACCTTGGAAATAGCTTGTGGGAGACGATAAACTTCACGAAGATAGGCATCGATTCTTTCAAAGATATCATACATATTACCTCGTCAAATGAAGTTCATATTTGTCTGATCAATACAGGCAATGGGGTGCCATTTATATCAGCATTAGAAGTTAGACTTTTACCCAACGTCACTTATCAAACAGCTTCTGGATCGTTATCGCTTAATTTTCGACTGGACATCGGTTCAACAGAAAATCAATCGTACAGGTTCCCTTTCGATGTCTATGATCGAATTTGGTCACCGTTTAACTTCAACGAGTGGACAAAGATAACCACTAATCTTACTATTGATGCTGAAGGGCACAACAATCACCAACCACCATCCGTTGTCATGAAAACTGCTTCCAGTATGACCAATGCAAGCAAGCCTCTAGACATTTGGTGGGATGCAGATGATGTATCTCAACAATACTATGTATTTATACACTTTGCTGAAGTTGTACAGCTTAATGCCAACCAGAGTAGAGGATTCAATATCACTCACAATGGGGATCCTTTCTATGGACCTCTTATTCCAGCATATTTGTCCACAACAACCATTTTCAGTCAAAACCCATTGGTTGCAGCAAAAACTCATCGATTTTCGTTATTTCCAATCGAGAACTCGACACTTCCTCCAATTGTTAATGCTTTCGAGATATATACCCTGAAAGACATTTCAGAATTAAAAACAGACCAAGAAGATGTGAATGCAATTACCAATATCAAGTCAAAATATGGAGTTAAAAGAGATTGGCAAGGAGATCCATGTGTGCCATTGGAATATCCCTGGAGTGGATTAGCTTGTAGCAATGGAACTGCTCCTAGAATTATATCTTTGAACCTGTCTGCAAGTGGACTTACTGGTGAGATATCTTCATACATATCCAATCTAGCAATGATACAAACTTTGGATTTATCAAACAATAATTTGACAGGACAACTGCCTGGTTTCCTGTCTAATTTGTCACAACTCAGAATCCTGAGGCTAGAAAACAACAATCTCTCAGGTCCAATTCCAGCTGATCTTCTGAAAAGATCCAATGACGGGTCACTATCATTAAGTGTGGGAGGTAACCAAAATGTTGATGGATGTGGATCAGATCCATGCTCAAAAAATGAAGAGAAGAAGAAAAGTATAATCATTCCAATAGTAGCAGCAATTGGTGGATTGCTCGCCATCCTCATAATTGCAGCAGTAACCTTTTGGATCATCAAATCTAGAAGGAAACGACAAGGTAAAAACGTCGTCTCAGTGGTGGATAGGTCAGAAACCAACAGTCAATTTGGAACTTCATTGGAGATGAGAAGACGACAGTTTACTTATTCAGAGGTGGTGAAAATGACCAACAATTTCAAAAGGGTTCTAGGTAAAGGAGGGTTTGGACAGGTTTATCATGGTGCCATTGATGACATTCAAGTGGCTGTAAAGATGCTGTCTTTATCATCATCTCAAGGATATCAGCAATTTCAAGCAGAGGTTTCCCTTCTTATGAGAGTTCACCACAGAAATTTGACAAGCCTCGTTGGATATGTGAACGAGGGAAACCACCTCGGCCTCATTTATGAGTACATGGCTAATGGAGATTTATCACAGCAACTTTCAGATACGAGCCCACGAATCTTAAGCTGGGAAGACAGACTTCGTATAGCAATGGATGCAGCTCAAGGATTGGAGTACCTGCATTGTGGTTGTAAGCCACCCATAGTACACAGAGATGTGAAAACAACAAACATCTTGTTGACAGAGAGTTTCCAAGGCAAACTTGCAGATTTTGGTCTGTCCAAAAGCTTCCCAATAGATGGCAACACCCATATGTCCACAGTCGTTGCTGGCACTCCTGGTTACCTTGACCCTGAGTACTACATATCAAACAGATTGACAGAGAAAAGTGATGTATACAGCTTTGGGATTGCTCTATTAGAAATAATAAGTTGCAGGCCAGTCATATCAAGAACAGAAGACACAGATACAGTTCATATATCAAAATGGGTTAATTCATTGGTTTCTCAAGGAGATATTGAAAGCATAGTTGACCCAAGATTACAAGGAGAATATGAAACTAACTCAGTTTGGAAAACAGTGGAAATAGCCATGGCTTGTGTTTCAGCAAATTCCGGCAGAAGACCGACGATGAGTCAAATAGTGGCAGAATTGAAAGATTGTTTGGCGACGGAATTGAACCGGCGGCGGCCGGGAAGTCGAAGACTTGATTCAACAAATTCAATGGAAATGAGGTCTATTACAATGGGTTTTAATGTTTCTGATTCTAGTCCTATGGCAAGGTGA 2697 40.16 MKKMTMGTLRSFLFGFLGGLALLLHVQAQDQSGFISLDCGSPANTSYTETTTSISYVSDAPYINSGVSGSVDSVYGNTYQRQMRLLRSFPEGIRNCYNVSVKKNTKYLIRASFLYGNYDGLSSLPKFDLYLGNSLWETINFTKIGIDSFKDIIHITSSNEVHICLINTGNGVPFISALEVRLLPNVTYQTASGSLSLNFRLDIGSTENQSYRFPFDVYDRIWSPFNFNEWTKITTNLTIDAEGHNNHQPPSVVMKTASSMTNASKPLDIWWDADDVSQQYYVFIHFAEVVQLNANQSRGFNITHNGDPFYGPLIPAYLSTTTIFSQNPLVAAKTHRFSLFPIENSTLPPIVNAFEIYTLKDISELKTDQEDVNAITNIKSKYGVKRDWQGDPCVPLEYPWSGLACSNGTAPRIISLNLSASGLTGEISSYISNLAMIQTLDLSNNNLTGQLPGFLSNLSQLRILRLENNNLSGPIPADLLKRSNDGSLSLSVGGNQNVDGCGSDPCSKNEEKKKSIIIPIVAAIGGLLAILIIAAVTFWIIKSRRKRQGKNVVSVVDRSETNSQFGTSLEMRRRQFTYSEVVKMTNNFKRVLGKGGFGQVYHGAIDDIQVAVKMLSLSSSQGYQQFQAEVSLLMRVHHRNLTSLVGYVNEGNHLGLIYEYMANGDLSQQLSDTSPRILSWEDRLRIAMDAAQGLEYLHCGCKPPIVHRDVKTTNILLTESFQGKLADFGLSKSFPIDGNTHMSTVVAGTPGYLDPEYYISNRLTEKSDVYSFGIALLEIISCRPVISRTEDTDTVHISKWVNSLVSQGDIESIVDPRLQGEYETNSVWKTVEIAMACVSANSGRRPTMSQIVAELKDCLATELNRRRPGSRRLDSTNSMEMRSITMGFNVSDSSPMAR 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10801984 10806183 + evm.model.ptg000015l.1454 HCH4g1454 543698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1454 898 ProSitePatterns Protein kinases ATP-binding region signature. 592 613 IPR017441 GO:0005524(InterPro)
HCH4g1454 898 Gene3D Transferase(Phosphotransferase) domain 1 661 876 - -
HCH4g1454 898 CDD TM_EGFR-like 514 548 - -
HCH4g1454 898 FunFam Leucine-rich repeat receptor-like protein kinase 560 660 - -
HCH4g1454 898 FunFam Leucine-rich repeat receptor-like kinase 370 500 - -
HCH4g1454 898 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 661 867 - -
HCH4g1454 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1454 898 SMART serkin_6 586 859 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1454 898 SUPERFAMILY L domain-like 398 482 - -
HCH4g1454 898 Gene3D Phosphorylase Kinase; domain 1 573 660 - -
HCH4g1454 898 ProSiteProfiles Protein kinase domain profile. 586 859 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1454 898 SUPERFAMILY Protein kinase-like (PK-like) 563 855 IPR011009 -
HCH4g1454 898 PANTHER OS07G0107800 PROTEIN-RELATED 26 863 - -
HCH4g1454 898 Pfam Leucine Rich Repeat 460 479 IPR001611 GO:0005515(InterPro)
HCH4g1454 898 Pfam Leucine Rich Repeat 437 458 IPR001611 GO:0005515(InterPro)
HCH4g1454 898 Pfam Malectin-like domain 37 358 IPR024788 -
HCH4g1454 898 Pfam Protein tyrosine and serine/threonine kinase 588 855 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1454 898 Gene3D Ribonuclease Inhibitor 372 491 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0921 HCH-Chr12:6251150 HCH4g1454 HCH-Chr4:10801984 6.80E-205 dispersed
HCH4g1451 HCH-Chr4:10725516 HCH4g1454 HCH-Chr4:10801984 2.10E-280 dispersed
HCH4g1454 HCH-Chr4:10801984 HCH4g1456 HCH-Chr4:10847580 0.00E+00 dispersed
HCH4g1453 HCH-Chr4:10793285 HCH4g1454 HCH-Chr4:10801984 3.00E-296 tandem
HCH4g1454 HCH-Chr4:10801984 HCH4g1455 HCH-Chr4:10810160 1.20E-130 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81481 PF12819 Malectin_like 3.40E-112 CL0202 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1454 - - - 0.0