Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1459 ATGGATGATTCGAATTGTGATGGATATGAACCAAAAGATTTTATGAACACATCTTCTGAATGGAGCAATTTCCAACAAGCTGGGATTGAAGAAAGTTTCCAAACAAACAACTCAAATTCTTCCAGCTTCTTCAACTCAATTCAAGATCAACCGTTGCCTTGGCTGACGCAGGCAAATTCAATTCCCCGAAAACCAGACGTCACCACCAAGCAGCTATCTTCAGCATTGGATTTGAGCTTCTCTCAGCACCAAGATGCTGCAAGATTGACAGCAGACACTCTGCTTTTGAAAACATGGGAGGGTCCTCCAACCCACATCGATCAGCCTTACACTATGAACCCGTTGGCTGGTTTCGCAGCTCGTGATATCGACATTGGAAGCCTCGAACCACCGATCATCGGTGGCTTAAATGGTGATAAGGCTGCAGCTATTACAACGACATGTTGTCTAGGGTCCTTGGGCTGCTTGCTTTCATCAACTAACAGCAAGAAAGATACATCAGTTGAAGGTGATGGAGTTTCCATGATGTTCAAAGATTATAATAATAAATGGAGCTTTGGAAGCAATGCAGTGTCTGCCAAAGAATCTGAAAATAATATCTTCAAAGAGAGAAACAATGAAGAAACTTATGGGCTCAACCTGCAACAAGGGATGAATTATGATCATGAAAATCAATTCAATTCCATAATTCAATCTAATTGTTGCCCAAATACCATTTCAGAAGGTGGATTCAGATTCAATATCTGGGATCAAAATTTGCCAAAACAAAAGAAACCAAGATCAGATCAGCAGCAATTACGAAACTTCTCATCAAATATCAACTTTCAACAATCATATTCATCAGGGTCTTCTTCTATTGATCAAGATTCTAATGCTGAAGCCTTTGAACAAATGAAGGAAATGAAGTATAGAGCAGCAGCATTAAGGCCTCTGAATTTAGGGTTGGAGATATTGGAGAAGCCCAAGAGGAAGAATGTTAGAATATCAACAGATCCACAAACTGTAGCTGCAAGGAAAAGGAGAGAGAGAATAAGTGAGAAAATTAGGGCTTTGCAGAGGTTGGTTCCTGGTGGGAGCAAGATGGACACTGCATCAATGCTTGAGGAAGCAGCAAATTACCTGAAGTTTCTAAGGGCTCAGGTCAAAGCTTTAGAGAATCTGGGACAAAAAATTGAAGCTTTGAATTGTCCTGCAGACAGCATAGCTTTCTCTTTCAACCCATCTTTCCCCATACAAACTTCTTCCCAACCCTCTCTCCAAAATCCCAACCATGTTAACCTTCCACAAAACTAG 1293 40.76 MDDSNCDGYEPKDFMNTSSEWSNFQQAGIEESFQTNNSNSSSFFNSIQDQPLPWLTQANSIPRKPDVTTKQLSSALDLSFSQHQDAARLTADTLLLKTWEGPPTHIDQPYTMNPLAGFAARDIDIGSLEPPIIGGLNGDKAAAITTTCCLGSLGCLLSSTNSKKDTSVEGDGVSMMFKDYNNKWSFGSNAVSAKESENNIFKERNNEETYGLNLQQGMNYDHENQFNSIIQSNCCPNTISEGGFRFNIWDQNLPKQKKPRSDQQQLRNFSSNINFQQSYSSGSSSIDQDSNAEAFEQMKEMKYRAAALRPLNLGLEILEKPKRKNVRISTDPQTVAARKRRERISEKIRALQRLVPGGSKMDTASMLEEAANYLKFLRAQVKALENLGQKIEALNCPADSIAFSFNPSFPIQTSSQPSLQNPNHVNLPQN 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10890983 10892275 - evm.model.ptg000015l.1459 HCH4g1459 543703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1459 430 SMART finulus 334 383 IPR011598 GO:0046983(InterPro)
HCH4g1459 430 CDD bHLH_AtIND_like 329 391 - -
HCH4g1459 430 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 154 422 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1459 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 377 IPR011598 GO:0046983(InterPro)
HCH4g1459 430 Pfam Helix-loop-helix DNA-binding domain 337 378 IPR011598 GO:0046983(InterPro)
HCH4g1459 430 Gene3D - 332 389 IPR036638 GO:0046983(InterPro)
HCH4g1459 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 390 IPR036638 GO:0046983(InterPro)
HCH4g1459 430 Coils Coil 367 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0634 HCH-Chr4:4156375 HCH4g1459 HCH-Chr4:10890983 4.90E-27 dispersed
HCH4g1459 HCH-Chr4:10890983 HCH9g0788 HCH-Chr9:5466071 5.50E-14 dispersed
HCH12g0533 HCH-Chr12:3131179 HCH4g1459 HCH-Chr4:10890983 7.20E-06 wgd
HCH4g1459 HCH-Chr4:10890983 HCH6g0128 HCH-Chr6:1596929 4.10E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33522 PF00010 HLH 5.30E-07 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1459 - - - 0.0