Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g1474 | ATGGAAAGTTTGTGGAATGTTGTGGCAGTGACAGGAATTTTCTTGACAACCATAATTCTGTGCAGGAGTTGCTGCTGCTGCTGCTATAGACTTTTAAGATCAAACTTTTGCAACCAACTTCCTTTAGGCTCTCTTGGTTGGCCTTTCATTGGTGAGACAATTGAGTTTGTCTCATGTGCTTATTCTGACCGTCCGGAGTCCTTCATGGACAAGCGCCGCCGTGTATATGGGAAGGTGTTCAAGTCACACATATTTGGAAGTCCTACCATTATTTCAACAGATGCAGAAGTGAGCAAGTTCATTCTGCAGAGTGATGCAAAGGCTTTTGTGCCATCTTATCCAAAATCTTTGACAGAATTGATGGGAAAGTCTTCTATTTTGCTATTAAATGGTAGCTTACAGAAGAGAATCCATGGTCTTGTGGGAGCTTTCTTCAAATCTCCACATCTCAAAGCTCAAATAACCAAGGATATGGAGAATTATGTCAAACTATCAATGGAAAAATGGACAGAGAATAATCCCATTTACCTACAAGATGAAACAAAAAATATTGCCTTTCAAGTATTAGTAAAGACATTGATAAGTTTGAATCCTGGTCCAAAAATGGAGCTTCTCAAGCAACAGTTTCAAGAATTCATGGCAGGGCTCATGGCTTTGCCTGTTAACATACCCGGGAGCAGACTTTACCGATCGTTGCAGGCCAAAAGGAATATGGTTAAATTAGTAAAGAAGATAATACAAGAAAGAAAAGGCAGTGGCATTTCTTTAGTCCCAGAAGATGTCATGGACATTTTGCTCAAAGATGCAAGTGAACAACTGACTGATGATTTAATAGCAGAAAACATGATTGATATGATGATTCCTGGGGAAGATTCCGTGCCAATCTTAATGACCCTTGCAATAAAATACCTCTCAGATTGTCCCACTGCACTTCGACATTTAAAGGAGGAAAACGTGAAGATGATACAACTCAAAGAGGCGCTAGGAGAGCCGTTGCATTGGAGCGATTACTTATCGTTGTCATTTACACAAAGTGTGATCACAGAAACTCTAAGGATGGGAAACATCATAATCGGGGTGATGCGGAAGGCGATGAAAGACGTTGAAATAAAAGGTTACTTAATACCGAAAGGTTGGTCGGTTCTTACGTATTTTAGATCAGTTCATCTTGATGATAATCACTATGACAGGCCTTACAAATTCAATCCATGGAGGTGGCAAGACAGAGATTTGAGCAGTTGTAATTTCACTCCTTTTGGAGGTGGACAAAGATTATGTCCTGGACTTGACTTTGCCAGGCTTGAAGCTTCCATTTTCCTACATCACTTTGTCACTGAATTCAGATGGATGGCTGAGGAAGATAGAATTATAAACTTTCCCACAGTGAGAATGAAAAAGAGGATGCCAGTTTGGGTGCAAAGGAGAAGGGACCCAAAATCCCATTTTTGA | 1449 | 40.23 | MESLWNVVAVTGIFLTTIILCRSCCCCCYRLLRSNFCNQLPLGSLGWPFIGETIEFVSCAYSDRPESFMDKRRRVYGKVFKSHIFGSPTIISTDAEVSKFILQSDAKAFVPSYPKSLTELMGKSSILLLNGSLQKRIHGLVGAFFKSPHLKAQITKDMENYVKLSMEKWTENNPIYLQDETKNIAFQVLVKTLISLNPGPKMELLKQQFQEFMAGLMALPVNIPGSRLYRSLQAKRNMVKLVKKIIQERKGSGISLVPEDVMDILLKDASEQLTDDLIAENMIDMMIPGEDSVPILMTLAIKYLSDCPTALRHLKEENVKMIQLKEALGEPLHWSDYLSLSFTQSVITETLRMGNIIIGVMRKAMKDVEIKGYLIPKGWSVLTYFRSVHLDDNHYDRPYKFNPWRWQDRDLSSCNFTPFGGGQRLCPGLDFARLEASIFLHHFVTEFRWMAEEDRIINFPTVRMKKRMPVWVQRRRDPKSHF | 482 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 11150924 | 11154749 | - | evm.model.ptg000015l.1474 | HCH4g1474 | 543718 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g1474 | 482 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 419 | 428 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH4g1474 | 482 | SUPERFAMILY | Cytochrome P450 | 39 | 475 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g1474 | 482 | PRINTS | E-class P450 group I signature | 426 | 449 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g1474 | 482 | PRINTS | E-class P450 group I signature | 73 | 92 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g1474 | 482 | PRINTS | E-class P450 group I signature | 416 | 426 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g1474 | 482 | PRINTS | E-class P450 group I signature | 344 | 362 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g1474 | 482 | PRINTS | E-class P450 group I signature | 384 | 408 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g1474 | 482 | CDD | CYP90-like | 72 | 470 | - | - | |
| HCH4g1474 | 482 | Gene3D | Cytochrome P450 | 34 | 475 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g1474 | 482 | PANTHER | CYTOCHROME P450 26 | 39 | 451 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER) | |
| HCH4g1474 | 482 | FunFam | 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 | 32 | 475 | - | - | |
| HCH4g1474 | 482 | Pfam | Cytochrome P450 | 42 | 455 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g1474 | 482 | PRINTS | P450 superfamily signature | 417 | 426 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g1474 | 482 | PRINTS | P450 superfamily signature | 426 | 437 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g1474 | 482 | PRINTS | P450 superfamily signature | 146 | 159 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH4g1474 | 482 | PRINTS | P450 superfamily signature | 345 | 356 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g0889 | HCH-Chr13:10014381 | HCH4g1474 | HCH-Chr4:11150924 | 4.40E-81 | dispersed | |
| HCH3g0264 | HCH-Chr3:1689574 | HCH4g1474 | HCH-Chr4:11150924 | 3.50E-62 | dispersed | |
| HCH4g1474 | HCH-Chr4:11150924 | HCH6g1791 | HCH-Chr6:50224219 | 2.60E-73 | dispersed | |
| HCH13g0666 | HCH-Chr13:5296722 | HCH4g1474 | HCH-Chr4:11150924 | 2.20E-85 | transposed | |
| HCH14g0614 | HCH-Chr14:34870399 | HCH4g1474 | HCH-Chr4:11150924 | 1.80E-141 | transposed | |
| HCH4g1474 | HCH-Chr4:11150924 | HCH6g0114 | HCH-Chr6:1443161 | 3.90E-202 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH4g1474 | K12638 | - | csv:101217830 | 775.007 |