Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1481 ATGGGGTTGCAATTATTGTTTTTGCTGATTGAGATTTGTTTTGCTTTCACTTCTTTATCAGCTTCTGAAGCTGCAGTTAACCGCCGTCCCCGTAGGCCAAGCGAATCGCCTTCTTTACTCACAGACCATTTTGTCTCTCCAGCCTTTCATGGCTTTGGAAGGAAAAGCCATGGCAAATTGGATAATCCAATTTCTAGTAAATTATTTAGAAGTTCATCTCCTCAAATCCCCTCTCACAGGAAAGCCATTCAATCAGAAGATGCAAGAGCTCCTAGCATTGCTCTTCCACCTTCAACGCCGTCTTTTGGAGGTCACGCTAAGAAATCAGCACATGGTCAGGCGCTCTCTCCATTGATCTCTTTCCATAAATATCACCATTCAAGAGGGAAGTTCAGAAAAGGCACTCCACGGCCTACATACCATATATCCCCCCAAGCGAGTAACCAGCAAGGCCCTACTGCTGTCACTCCAAGTCAGTCACCGTTCCCGTCTGTCGTGAGATGGTCACCTGGACCCGCACCATCCCCAACAACTCAATCAAGCCACTATTATATGCCGATTCCCGCGCCTACGACTTCTCCTTTGGGTTCTTACAACAAGAAGAAGGGCTTGCCACCATCACATGTCATGATGCTACCACCTCCACCTCCTAATGGGGATTGTGCGGTGACATGCTCAGAGCCACTGACCTACACACCTCCCGGAACGCCCTGCGGTTGTGTGTGGCCGATTCAAGTCAAATTGAGTCTTGGTGTTGCAATATACACATTTTTCCCGTTAGTTTCAGAACTTGCAGAGGAAATTGCAGAGAGTATTAGTTTGAACCATAGCCAAGTTCGGATTATGGGAGCAGATGCCTCTAGTCAGCAATTGGAAAAAACCACTGTCCTCATCAACTTGGTTCCTAGAGGATCAAAATTCAATCATACTACAGCATTTTCTATCTACCAGAAATTTTGGCAGAGGAAGATATTCATTAAGCCTTCTCTGTTCAGTGACTATCAAGTATTATATGTTAACTATCCAGGACTTCCGCCATCTCCCCCATCAGTGTTCTCGGGTACTTCTACAATGAATGATGGTTTAAACACTGACCATAGCAATCCGGGAAATGCAATAAAACCTTTGGGAGTCGAATTGCCGAGAAGAAGGAAAGAAGGGCTCGGCAGAAATATGATTGCTGTGATTATTATATCATCTTTCACTGCCTTTGTTGTATGTGTTGGAATTGCTTGGCTTTGCCTGTTGAGGTGCAGAGTGTCTGCAAGTCAACCAAAGCAAGTTCCACATACCTTAATAGCCTCACCTACAAAACCACCAGGCACTGCTGGATCAATAATGGTTGAAAGCGAACTTGGTTCGTCATCCGTGCCTCCCAATGCTGACCCTATGACTTATATTGGAGCTGCAAAGAAATTCACTCTGAAAGATATTGAGAAAGCCACCAATAACTTTGATGTTACAAGAATATTAGGAGAAGGGGGCTTTGGAATAGTTTACAGTGGCAGTTTAGATGATGGAAGGGAAGTGGCTGTGAAGGTTCTGAAAAGAGATAATCAACATGGTACAAGGGAATTCTTGGCAGAAGTCGAGATGCTAAGCCGGCTGCACCATAGAAATCTAGTTAAACTTATAGGTATTTGTACAGAGGATCAGATTCGCTGCCTTGTGTATGAACTGGTCCCAAATGGAAGTGTTGAATCCCATTTACATGGCATTGACAAGGAAACTAGTCCACTTGACTGGGATGCCCGGATGAAGATTGCCCTTGGTGCTGCTCGAGGCCTCGCCTATCTGCATGAAGATTCCAACCCCCGAGTCATTCACCGTGACTATAAAGCTAGCAACATCTTGTTAGAATTCGATTTTACACCTAAAGTTTCAGATTTTGGATTAGCTAGAACTGCATTAGAGGAAGGAAACAAGCACATCTCGACACATGTGATGGGAACTTTTGGCTATTTAGCCCCAGAATATGCAATGACTGGCCATCTTCTTGTAAAGAGTGACGTTTACAGCTACGGTGTAGTCCTTCTCGAGCTGCTTACAGGACAGAAGCCAGTTGACTTGTCACTTCCACCAGGACAAGAAAATCTTGTTGCTTGGGCTCGTCCTCTTCTCACAAGCAAGGAAGGCTTAGATACAATAATAGACCCAGCTATAAAGTCTGATATCTCCATGGATAGCTTGGCCAGAGTAGCAGCAATTGCTTCAATGTGTGTGCAACCTGAAGTGTCTCACCGACCATTTATGGGTGAGGTTGTTCAAGCCCTGAAACTTGTTTGCAATGAGTTTGAAGAAACAAATGAGCCAGGTTCACGAAGTTACAGTCGAGATGAACTTCTAACTTACACGGATGGTAAACTCGGAGGAATTTCAGGTGAGATCATGAATGCTTCAGAATCCTCACGCCCATTCTTTCCAGGAAAGGAGACAAATGTAAGATTATCGGCATCGGATATGATAAGCTCATCCGCAAGATTTGAAGGGCAGGAACCGGTTTCTTTCAGGTGGCATTCTTCAAACTCCGAGCCATTGAGAACTGGTAGGAGAAGGCACATTTGGCAGAGGTTAAGAAGTTTGTCAAGGGGCAGCATCAGTGAGCATGGTTTTTCTTCAAAGTTTTGGCCTGGATTTCATTAG 2643 44.61 MGLQLLFLLIEICFAFTSLSASEAAVNRRPRRPSESPSLLTDHFVSPAFHGFGRKSHGKLDNPISSKLFRSSSPQIPSHRKAIQSEDARAPSIALPPSTPSFGGHAKKSAHGQALSPLISFHKYHHSRGKFRKGTPRPTYHISPQASNQQGPTAVTPSQSPFPSVVRWSPGPAPSPTTQSSHYYMPIPAPTTSPLGSYNKKKGLPPSHVMMLPPPPPNGDCAVTCSEPLTYTPPGTPCGCVWPIQVKLSLGVAIYTFFPLVSELAEEIAESISLNHSQVRIMGADASSQQLEKTTVLINLVPRGSKFNHTTAFSIYQKFWQRKIFIKPSLFSDYQVLYVNYPGLPPSPPSVFSGTSTMNDGLNTDHSNPGNAIKPLGVELPRRRKEGLGRNMIAVIIISSFTAFVVCVGIAWLCLLRCRVSASQPKQVPHTLIASPTKPPGTAGSIMVESELGSSSVPPNADPMTYIGAAKKFTLKDIEKATNNFDVTRILGEGGFGIVYSGSLDDGREVAVKVLKRDNQHGTREFLAEVEMLSRLHHRNLVKLIGICTEDQIRCLVYELVPNGSVESHLHGIDKETSPLDWDARMKIALGAARGLAYLHEDSNPRVIHRDYKASNILLEFDFTPKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGQKPVDLSLPPGQENLVAWARPLLTSKEGLDTIIDPAIKSDISMDSLARVAAIASMCVQPEVSHRPFMGEVVQALKLVCNEFEETNEPGSRSYSRDELLTYTDGKLGGISGEIMNASESSRPFFPGKETNVRLSASDMISSSARFEGQEPVSFRWHSSNSEPLRTGRRRHIWQRLRSLSRGSISEHGFSSKFWPGFH 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11199573 11203904 - evm.model.ptg000015l.1481 HCH4g1481 543725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1481 880 MobiDBLite consensus disorder prediction 65 80 - -
HCH4g1481 880 ProSitePatterns Protein kinases ATP-binding region signature. 491 513 IPR017441 GO:0005524(InterPro)
HCH4g1481 880 PANTHER OS01G0750732 PROTEIN 222 776 IPR050885 -
HCH4g1481 880 Gene3D Transferase(Phosphotransferase) domain 1 561 779 - -
HCH4g1481 880 FunFam Receptor-like serine/threonine-protein kinase ALE2 561 778 - -
HCH4g1481 880 ProSiteProfiles Protein kinase domain profile. 485 766 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1481 880 MobiDBLite consensus disorder prediction 63 111 - -
HCH4g1481 880 Gene3D Phosphorylase Kinase; domain 1 456 560 - -
HCH4g1481 880 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1481 880 MobiDBLite consensus disorder prediction 140 183 - -
HCH4g1481 880 Pfam Protein tyrosine and serine/threonine kinase 487 758 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1481 880 FunFam receptor-like serine/threonine-protein kinase ALE2 460 560 - -
HCH4g1481 880 CDD STKc_IRAK 491 759 - -
HCH4g1481 880 MobiDBLite consensus disorder prediction 128 183 - -
HCH4g1481 880 SUPERFAMILY Protein kinase-like (PK-like) 459 758 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1481 HCH-Chr4:11199573 HCH5g0141 HCH-Chr5:841047 1.60E-169 dispersed
HCH4g1481 HCH-Chr4:11199573 HCH8g0646 HCH-Chr8:43267767 2.00E-228 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81485 PF07714 PK_Tyr_Ser-Thr 1.30E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1481 - - - 0.0