Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1484 ATGAGCCACCATTCTTATCCAAGAACTCATGCTAATTCCTCCTCCTCCACCACCCAAGCCTGTGCTGCATGTAAATACCAACGTAGAAAATGTGCTCCTGATTGCATTCTTGCTCCCTATTTCCCTCACGATCGTCAAAGGCAATTCCTCAACGCTCATAAGTTATTTGGCGTCAGCAACATCACCAAGATCATCAAGAATCTTAACCGTGAGGAGAAAGACGAGGCCATGCGCACCATCATGTATCAATCCGACGTTCGAGCCGTAGACCCCGTTGGAGGTTGTTTACGTATCATCAATGATCTCCAGCGGCAGATCGAATACAACAAAGCTGAGCTTGATATCGTGCTTCATCAGCTCGCTATCATCAAGGCTCAAGAACAACAACAACAGCAACAACAGCGGCACGATGCCGGTGAACTTCTTCTGCTTGATGACCCGATCATGAGTGGATATAATCACGATCATAATAGTAACGTGGGAATCCTGCAGCAACATCAGTTTATGCAACCCTATGAGGCTGCTGCTTTTGTTGATCAGAATTTGGATCAGGAAGATGTTGGGATGTGGGGGTTGCAGGATGCCGTATCGATATCGATGTCGTCGTCTTCGTCGATGCATCTCAGACAGGGAGGATCTGTTAATGATTTTGATGATATCAAGCTTGAAAGAAATGATCATCATCTCCACCACCATCATTATCATCAAAACCTTAACTTTGAGCCTGATGATCAAGAATTAGTTCATCAAAGTGAGGTGGATTTGCTAAAGATGGACAATATGATGTTGAAAGAGGACTTAAATGCAATACAACAGACTCAAAATCAACAGCTTAAAGGTGCAGTACCTACTTTGTTTAGTTTCCCAAATTGTGATACTTTAGATTGA 888 43.36 MSHHSYPRTHANSSSSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLNREEKDEAMRTIMYQSDVRAVDPVGGCLRIINDLQRQIEYNKAELDIVLHQLAIIKAQEQQQQQQQRHDAGELLLLDDPIMSGYNHDHNSNVGILQQHQFMQPYEAAAFVDQNLDQEDVGMWGLQDAVSISMSSSSSMHLRQGGSVNDFDDIKLERNDHHLHHHHYHQNLNFEPDDQELVHQSEVDLLKMDNMMLKEDLNAIQQTQNQQLKGAVPTLFSFPNCDTLD 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11227302 11229435 - evm.model.ptg000015l.1484 HCH4g1484 543728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1484 295 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 18 187 - -
HCH4g1484 295 Pfam Lateral organ boundaries (LOB) domain 20 115 IPR004883 -
HCH4g1484 295 ProSiteProfiles LOB domain profile. 19 120 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0705 HCH-Chr2:50823790 HCH4g1484 HCH-Chr4:11227302 1.20E-18 dispersed
HCH4g1484 HCH-Chr4:11227302 HCH8g1410 HCH-Chr8:48776485 6.90E-24 dispersed
HCH13g0766 HCH-Chr13:6950194 HCH4g1484 HCH-Chr4:11227302 1.50E-28 transposed
HCH4g1484 HCH-Chr4:11227302 HCH8g0643 HCH-Chr8:43242612 1.10E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33523 PF03195 LOB 2.90E-36 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1484 - - - 0.0