Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1486 ATGATGATGAAAGGCTTTCTGTCTCAAGCTCAACAAGCAGCAACTATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTGCTGCGAGTGTTTCTTCAGCCAATAAAACTGAGATAATTGCAACCAATTATCCCAATCAATATTTTGCTTCCCTACCAACTCAATCTCAACCAGCTGCAAAGAAAAAGAGAAACCTTCCAGGCAATCCAGACCCAGATGCAGAAGTGATAGCTTTAACACCAAAAACACTCATGGCAACAAACAGATTCATATGTGAGATCTGCAACAAAGGGTTTCAAAGGGATCAGAATCTTCAGCTCCATAGGAGAGGTCATAATCTTCCATGGAAATTGAAGCAAAGATCAAAGCAAGAGGTAATAAGGAAGAAGGTTTACGTTTGTCCAGAATCAAACTGTGTTCATCATGACCCATCAAGGGCTCTTGGAGACTTGACTGGAATCAAGAAGCACTTTTGCAGAAAGCATGGGGAGAAGAAATGGAAATGTGATAAGTGCTCTAAGAAGTATGCAGTTCAATCTGATTGGAAAGCTCATTCCAAGATCTGTGGCACTAAAGAGTACAGATGTGACTGTGGCACTCTTTTTTCTAGGAGGGATAGTTTCATTACTCACAGAGCCTTCTGTGATGCATTAGCAGATGAGAGTGCAAGATCAGCCATGGCACTGAATCCACTTCTCTCTTCCCACCACCACCACCCGCTACCGCCGCCGCCGACGGCATCCGTTCAAACACACTTCAACAATCCACAAGATCACCTCTCCATTTTCTCTCTCAAAAGATCAGATCATCACCACCATCAACAAGCAAACAACAACAATTTAAGGGCTGAAATCCCACCATGGCTTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCAGCCCAACCCCACATTGATCTAAGGCCTGAAATCTTCACACACCAAGACTTAGAACTTTCACATCATAATCATCAAACCCTAAACCCTAACCCTAATACTCTTGGCCCCACTCTCCCTCCTCCATATCACTCTCCCTCTCTCTCTCCACACATCTCAGCAACTGCACTGCTGCAGAAGGCAGCCCAAATGGGTGCAACCATGAGCAGTCCCACTTCCACGAGTGGCTCAATTGCGAGGCCCCACGGCCATAGCCAGATTCACGTGTCTACAGCTGATTGTAATATCATTGCAAGTGGTAATTTTGCTGGCCACAATATCAATTTATCCTCACGTGATCATCTCCAGATAGGTACTCTGGCATCCTCAGCCGCAGCCGCAGCCACAGGAGGCCTTGGTCATGGCCACGGCAACATCACCGTGGCCATGGGGACCGTTAGTTATAGTAATAGTAGTAGTCATATTGATTATGGGAATAAGGCTACAGCGGCTGCTGCCGGTGCAGGACCACCGGCAGGAGCCGCGTTTCTTCATCATGATATGATGAATTCCTTCTCTTCTGCTGCTGCTATTGCTGCTCATAGTTTTCAAGATTCTTCGTTTGAGGATGCTTTTCGTGCTATGCATGACACTACGCTTCCGAAATCCTCCACCGCTACCGCTGCTACTAATCAGATGTCCAACGGAGCTGTCACTTCCGCCACCACCGGAGGCGGCGGCGGCGGCAGGAGTGAGGGTTTGACTAGAGATTTCTTGGGTCTTAGACCTCTTTCCCATGGTGATATTCTAAGCATTGCTGGCTTTGGTAACTGCATGGGCACTTCTTCCAATCATCAAAATCAAATCCAAAAACCATGGCAAGGTTAG 1770 46.16 MMMKGFLSQAQQAATMDENLSNLTSASGEAAASVSSANKTEIIATNYPNQYFASLPTQSQPAAKKKRNLPGNPDPDAEVIALTPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIRKKVYVCPESNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSHHHHPLPPPPTASVQTHFNNPQDHLSIFSLKRSDHHHHQQANNNNLRAEIPPWLSFSSSSSSSSAQPHIDLRPEIFTHQDLELSHHNHQTLNPNPNTLGPTLPPPYHSPSLSPHISATALLQKAAQMGATMSSPTSTSGSIARPHGHSQIHVSTADCNIIASGNFAGHNINLSSRDHLQIGTLASSAAAAATGGLGHGHGNITVAMGTVSYSNSSSHIDYGNKATAAAAGAGPPAGAAFLHHDMMNSFSSAAAIAAHSFQDSSFEDAFRAMHDTTLPKSSTATAATNQMSNGAVTSATTGGGGGGRSEGLTRDFLGLRPLSHGDILSIAGFGNCMGTSSNHQNQIQKPWQG 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11238449 11241263 - evm.model.ptg000015l.1486 HCH4g1486 543730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1486 589 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 49 561 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH4g1486 589 MobiDBLite consensus disorder prediction 324 344 - -
HCH4g1486 589 MobiDBLite consensus disorder prediction 237 257 - -
HCH4g1486 589 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
HCH4g1486 589 FunFam protein indeterminate-domain 12-like 72 141 - -
HCH4g1486 589 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 196 231 - -
HCH4g1486 589 Pfam Zinc finger, C2H2 type 93 115 IPR013087 -
HCH4g1486 589 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 131 165 - -
HCH4g1486 589 SUPERFAMILY beta-beta-alpha zinc fingers 92 190 IPR036236 -
HCH4g1486 589 Gene3D Classic Zinc Finger 73 144 - -
HCH4g1486 589 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 169 193 - -
HCH4g1486 589 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
HCH4g1486 589 Gene3D Classic Zinc Finger 147 227 - -
HCH4g1486 589 MobiDBLite consensus disorder prediction 519 545 - -
HCH4g1486 589 MobiDBLite consensus disorder prediction 519 540 - -
HCH4g1486 589 FunFam protein indeterminate-domain 5, chloroplastic-like 148 227 - -
HCH4g1486 589 SMART c2h2final6 135 165 IPR013087 -
HCH4g1486 589 SMART c2h2final6 93 115 IPR013087 -
HCH4g1486 589 SMART c2h2final6 170 190 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1486 HCH-Chr4:11238449 HCH7g0854 HCH-Chr7:23632664 2.30E-87 dispersed
HCH12g0500 HCH-Chr12:2934064 HCH4g1486 HCH-Chr4:11238449 3.90E-85 wgd
HCH4g1486 HCH-Chr4:11238449 HCH6g0106 HCH-Chr6:1325702 1.10E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33524 PF12171 zf-C2H2_jaz 8.90E-05 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1486 K25870 - csv:101220200 560.836