Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH4g1491 | ATGACACGGGGAAGAATAAGGGAGAAGCTCCGCCGAAGCCATCTTTACACATTCTCATGTCTCCGGCCAAGTACAAATGAAATCGAGGAGCCAAATGCACTTTCAGGACCTGGCTTCTCACGAACGGTCTGTTGTAACCAACCTCATCTCCATGAGAAGAAGCCTTTGAAATACTGCTCGAATTTCATATCCACGACAAAGTATAATGTTCTCACTTTCTTGCCTAAGGCTCTCTTTGAGCAATTTCGGCGGGTTGCCAATTTGTATTTTCTTTTGGCTGCATTGCTTTCACTCACACCAGTTGCCCCATTTTCGGCTATGAGCATGATTGCTCCTCTGGTATTTGTTGTGGGGCTCAGTATGGCTAAAGAAGCTCTTGAGGACTGGCGTCGATTTGTGCAGGATATGAAGGTTAATCTCAGGAAAGTTATGGTCCATAAAGGGGATGGTGTTTTTGGTTACAGACCTTGGCATAAAATTCGTGTTGGAGATGTGTTAAAAGTAGAAAAGGATCAGTTCTTTCCAGCCGATTTACTTCTCTTATCATCCTGCTATGAGGATGGTATATGTTATGTGGAAACTATGAATTTAGATGGTGAGACCAATCTGAAAGTAAAGAGGTCTTTGGAAGTAACCTTGCCTTTGGACGATGATGTGACTTTCAAGGATTTCACTGGAAAAATTTACTGTGAGGATCCAAACCCAAATCTTTACACCTTTGTAGGTAATCTTGAGTATGATCGACAGTTGTATCCTCTCGATCCTAATCAGATTCTCCTCAGAGATTCGAAATTGAGGAATACAGCATATGCTTATGGGGTGGTGATATTCACTGGTCATGATAGCAAAGTCATGCAGAATGCAACAAAATCTCCTTCCAAAAGAAGTAGAATAGAGAAGAAAATGGACAAAATTATTTACATACTATTCACTCTGCTAATATTGATCTCATCAATCAGCTCAATAGGTTTTGCTGTGAAGACAAAGTACCAAATGACAGATTGGTGGTATTTACAAACTACAGGTGACGATCCAATGTATAGTCCGAGCAGGCCTGCCTTATCAGGGCTTTTACATCTGATCACTGCCCTTATCCTTTATGGATATTTGATACCTATCTCACTTTATGTTTCCATCGAGGTTGTGAAGGTTTTGCAAGCTTCCTTTATGAACCAAGATATTCACATGTATGATGAAGAGACTGGCAATCCCGCACGGGCTCGAACATCAAATTTGAATGAGGAGTTGGGCCAGGTAGACACGATCCTCTCTGATAAAACTGGCACTTTGACTTGCAATCAGATGGACTTTTTGAAATCTTCCATTGCCGGCACTGCATATGGTATTCGATCAAGTGAAGTTGAACTTGCTGCTGCAAGGCAGATGGCTATTGACCTTGAGGATCAGGATGGAGAGTTTCCCAATTTTACCGCACATAAGAGTATGCGACACCGTTCACAACCGAATGGCAGAAAAGAGTCGGAGATTGAACTGGAGACTGTTGTTACTTCTAGTGATGCCAAGGATCAGAAGCCTGCCATAAAATATTTTAGTTTTGAGGACAACCGCCTGATGGATGGAAACTGGTTGATGGAGCCCAATCATGATGTTATTCTATTATTTTTCCGAATTTTAGCAATTTGTCACACTGCAATTCCCGAGCTGAATGAAGAGACTGGTAGTTTCACATATGAAGCAGAGTCCCCTGATGAAGGTGCTTTTCTTGTTGCAGCTAGAGAATTTGGTTTTGAATTTTGCAAGAGAACACAATCAAGTTTGGTCGTCCGTGAAAGATATCCTTCTACTGAACAAGTAGTTGAAAGGGAATACAAAATATTGAATCTTTTGGATTTCACAAGCAAAAGAAAGCGAATGTCTGTGATTGTTAGGGACGAGGACGGACAGATTCTTCTTCTCTGCAAAGGTGCTGATAGCATCATCTTTGATCGACTATCAAAGAATGGAAGAATGTATGAGGAATCAACCACCCGGCATTTGAATGAATATGGAGAAGCTGGATTGCGTACACTGGCACTTGCTTATAGAAAGCTCGAGGAGTCTGAATACACTGCTTGGAACAATGAGTTTCAAAAGGCCAAGACATCCATTGGGGGAGATAGAGAAGCAATGCTTGAGCGAGTTTCTGATCTCATGGAACGAGAGTTAACCCTTATTGGTGCTACTGCTGTGGAGGACAAGTTACAAAACGGGGTGCCCCAGTGCATAGACAAACTTGCGCAAGCTGGTCTTAAGATCTGGGTTCTGACAGGAGATAAGATGGAAACCGCCATCAACATAGGATTTGCATGTAGTTTACTACGACAGGGAATGAAGCAGATCTTCATAACATCAGCAAGCTCCGACAACTTAGCGAAGGATGGCAAAGAGGCCATGAAAGAGAATATTTTGAATCAAATCACCAATGCCTCACAAATGATCAAGCTGGAGAAGGATCCACATGCTGCATTTGCTTTAATTATTGATGGGAAGACCCTAACCTATGCTCTAGAGGATGATATGAAGCATCAATTCCTTGGACTAGCTGTTGATTGTGCATCGGTCATTTGCTGTCGCGTTTCTCCCAAGCAAAAGGCAATGGTAACTAGGTTAGTGAAAGAAGGTACTGGTAAAACCACTTTAGCAATTGGTGATGGTGCAAATGATGTTGGAATGATTCAAGAGGCTGATATCGGTGTTGGCATCAGTGGGGTTGAAGGTATGCAGGCTGTGATGGCCAGTGATTTCTCTATTGCTCAATTTCGATTTCTGGAAAGGCTTCTGGTAGTCCATGGACACTGGTGCTATAAGAGGATAGCACAAATGATTTGCTATTTCTTCTACAAGAATATTGCATTTGGATTAACCCTGTTCTACTTTGAAGCATTCACGGGATTTTCTGGTCAATCGATTTACGATGATTACTACATGCTATCATTTAACGTCATACTCACTTCATTACCTGTAATTTCTCTTGGAGTTTTCGAACAAGATGTCTCTTCTGAGGTGTGCCTTCAGTTTCCCGCACTGTATCAGCAAGGTCCCAGAAACTTGTTCTTTGACTGGTCCCGGATTTTTGGATGGATGGGGAATGCTCTCTATTCCTCTCTCGTAACATTCTTCCTCACGCTCATCATTTTCTACGATCAGGCATTCCGCGCTGGTGGTCAGACTGCCGATATGACTGCTGTAGGTACGACCATGTTTACTTCCATCATATGGGCCGTCAATTGCCAAATCGCCCTCACAATGAGCCATTTCACCTGGATCCAACACCTTCTCGTCTGGGGCAGCATTGGCATGTGGTATTTGTTTATCTTACTCTATGGAATGATGACTTCATCTGGGAATGCATATCAAATTTTTGTTGAAGCACTAGGCCCTGCCCCTGTTTATTGGGGAACAACCTTATTAGTAACAATTACATGCAATCTTCCATATCTGGCCCATATATCCTTTCAGAGAAGTTTTAATCCTTTGGATCATCATATCATCCAAGAAATCAAATACTACAGAAAGGATGTTGAAGATAAACACATGTGGACCAGGGAAAGATCTAAAGCAAGACAAAAGACCAAGATAGGGTTCACAGCCAGAGTAGAAGCAACGATCAGACAGTTGAGAGGAAGGCTGCAAAAGAAACACTCTTCCATGGGTGGGCATAATGCTATATCATGA | 3675 | 42.15 | MTRGRIREKLRRSHLYTFSCLRPSTNEIEEPNALSGPGFSRTVCCNQPHLHEKKPLKYCSNFISTTKYNVLTFLPKALFEQFRRVANLYFLLAALLSLTPVAPFSAMSMIAPLVFVVGLSMAKEALEDWRRFVQDMKVNLRKVMVHKGDGVFGYRPWHKIRVGDVLKVEKDQFFPADLLLLSSCYEDGICYVETMNLDGETNLKVKRSLEVTLPLDDDVTFKDFTGKIYCEDPNPNLYTFVGNLEYDRQLYPLDPNQILLRDSKLRNTAYAYGVVIFTGHDSKVMQNATKSPSKRSRIEKKMDKIIYILFTLLILISSISSIGFAVKTKYQMTDWWYLQTTGDDPMYSPSRPALSGLLHLITALILYGYLIPISLYVSIEVVKVLQASFMNQDIHMYDEETGNPARARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKSSIAGTAYGIRSSEVELAAARQMAIDLEDQDGEFPNFTAHKSMRHRSQPNGRKESEIELETVVTSSDAKDQKPAIKYFSFEDNRLMDGNWLMEPNHDVILLFFRILAICHTAIPELNEETGSFTYEAESPDEGAFLVAAREFGFEFCKRTQSSLVVRERYPSTEQVVEREYKILNLLDFTSKRKRMSVIVRDEDGQILLLCKGADSIIFDRLSKNGRMYEESTTRHLNEYGEAGLRTLALAYRKLEESEYTAWNNEFQKAKTSIGGDREAMLERVSDLMERELTLIGATAVEDKLQNGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQIFITSASSDNLAKDGKEAMKENILNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDMKHQFLGLAVDCASVICCRVSPKQKAMVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAFTGFSGQSIYDDYYMLSFNVILTSLPVISLGVFEQDVSSEVCLQFPALYQQGPRNLFFDWSRIFGWMGNALYSSLVTFFLTLIIFYDQAFRAGGQTADMTAVGTTMFTSIIWAVNCQIALTMSHFTWIQHLLVWGSIGMWYLFILLYGMMTSSGNAYQIFVEALGPAPVYWGTTLLVTITCNLPYLAHISFQRSFNPLDHHIIQEIKYYRKDVEDKHMWTRERSKARQKTKIGFTARVEATIRQLRGRLQKKHSSMGGHNAIS | 1224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 11291545 | 11296446 | + | evm.model.ptg000015l.1491 | HCH4g1491 | 543735 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH4g1491 | 1224 | SFLD | Haloacid Dehalogenase | 407 | 933 | - | - | |
HCH4g1491 | 1224 | Gene3D | - | 593 | 724 | IPR023299 | GO:0000166(InterPro) | |
HCH4g1491 | 1224 | PRINTS | P-type cation-transporting ATPase superfamily signature | 423 | 437 | - | - | |
HCH4g1491 | 1224 | PRINTS | P-type cation-transporting ATPase superfamily signature | 882 | 901 | - | - | |
HCH4g1491 | 1224 | FunFam | Phospholipid-transporting ATPase | 592 | 723 | - | - | |
HCH4g1491 | 1224 | Coils | Coil | 449 | 469 | - | - | |
HCH4g1491 | 1224 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 425 | 431 | IPR018303 | - | |
HCH4g1491 | 1224 | SUPERFAMILY | Calcium ATPase, transduction domain A | 146 | 288 | IPR008250 | - | |
HCH4g1491 | 1224 | SUPERFAMILY | HAD-like | 411 | 926 | IPR036412 | - | |
HCH4g1491 | 1224 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 910 | 1158 | IPR032630 | - | |
HCH4g1491 | 1224 | CDD | P-type_ATPase_APLT_Dnf-like | 60 | 1042 | - | - | |
HCH4g1491 | 1224 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 56 | 1149 | IPR023298 | - | |
HCH4g1491 | 1224 | NCBIfam | phospholipid-translocating P-type ATPase | 58 | 1166 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
HCH4g1491 | 1224 | Pfam | Phospholipid-translocating ATPase N-terminal | 44 | 110 | IPR032631 | - | |
HCH4g1491 | 1224 | Gene3D | - | 118 | 291 | - | - | |
HCH4g1491 | 1224 | NCBIfam | HAD-IC family P-type ATPase | 854 | 963 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
HCH4g1491 | 1224 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 37 | 1172 | - | GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER) | |
HCH4g1491 | 1224 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 520 | 687 | IPR023299 | GO:0000166(InterPro) | |
HCH4g1491 | 1224 | Pfam | Cation transport ATPase (P-type) | 547 | 653 | - | - | |
HCH4g1491 | 1224 | FunFam | Phospholipid-transporting ATPase | 725 | 922 | - | - | |
HCH4g1491 | 1224 | SFLD | p-type atpase | 407 | 933 | IPR044492 | - | |
HCH4g1491 | 1224 | Gene3D | - | 725 | 922 | IPR023214 | - | |
HCH4g1491 | 1224 | FunFam | Phospholipid-transporting ATPase | 119 | 289 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH1g0823 | HCH-Chr1:56880617 | HCH4g1491 | HCH-Chr4:11291545 | 0.00E+00 | dispersed | |
HCH4g1491 | HCH-Chr4:11291545 | HCH9g0840 | HCH-Chr9:5944635 | 2.30E-190 | dispersed | |
HCH4g1491 | HCH-Chr4:11291545 | HCH3g0149 | HCH-Chr3:953368 | 0.00E+00 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH4g1491 | K01530 | - | csv:101221220 | 2169.04 |