Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1491 ATGACACGGGGAAGAATAAGGGAGAAGCTCCGCCGAAGCCATCTTTACACATTCTCATGTCTCCGGCCAAGTACAAATGAAATCGAGGAGCCAAATGCACTTTCAGGACCTGGCTTCTCACGAACGGTCTGTTGTAACCAACCTCATCTCCATGAGAAGAAGCCTTTGAAATACTGCTCGAATTTCATATCCACGACAAAGTATAATGTTCTCACTTTCTTGCCTAAGGCTCTCTTTGAGCAATTTCGGCGGGTTGCCAATTTGTATTTTCTTTTGGCTGCATTGCTTTCACTCACACCAGTTGCCCCATTTTCGGCTATGAGCATGATTGCTCCTCTGGTATTTGTTGTGGGGCTCAGTATGGCTAAAGAAGCTCTTGAGGACTGGCGTCGATTTGTGCAGGATATGAAGGTTAATCTCAGGAAAGTTATGGTCCATAAAGGGGATGGTGTTTTTGGTTACAGACCTTGGCATAAAATTCGTGTTGGAGATGTGTTAAAAGTAGAAAAGGATCAGTTCTTTCCAGCCGATTTACTTCTCTTATCATCCTGCTATGAGGATGGTATATGTTATGTGGAAACTATGAATTTAGATGGTGAGACCAATCTGAAAGTAAAGAGGTCTTTGGAAGTAACCTTGCCTTTGGACGATGATGTGACTTTCAAGGATTTCACTGGAAAAATTTACTGTGAGGATCCAAACCCAAATCTTTACACCTTTGTAGGTAATCTTGAGTATGATCGACAGTTGTATCCTCTCGATCCTAATCAGATTCTCCTCAGAGATTCGAAATTGAGGAATACAGCATATGCTTATGGGGTGGTGATATTCACTGGTCATGATAGCAAAGTCATGCAGAATGCAACAAAATCTCCTTCCAAAAGAAGTAGAATAGAGAAGAAAATGGACAAAATTATTTACATACTATTCACTCTGCTAATATTGATCTCATCAATCAGCTCAATAGGTTTTGCTGTGAAGACAAAGTACCAAATGACAGATTGGTGGTATTTACAAACTACAGGTGACGATCCAATGTATAGTCCGAGCAGGCCTGCCTTATCAGGGCTTTTACATCTGATCACTGCCCTTATCCTTTATGGATATTTGATACCTATCTCACTTTATGTTTCCATCGAGGTTGTGAAGGTTTTGCAAGCTTCCTTTATGAACCAAGATATTCACATGTATGATGAAGAGACTGGCAATCCCGCACGGGCTCGAACATCAAATTTGAATGAGGAGTTGGGCCAGGTAGACACGATCCTCTCTGATAAAACTGGCACTTTGACTTGCAATCAGATGGACTTTTTGAAATCTTCCATTGCCGGCACTGCATATGGTATTCGATCAAGTGAAGTTGAACTTGCTGCTGCAAGGCAGATGGCTATTGACCTTGAGGATCAGGATGGAGAGTTTCCCAATTTTACCGCACATAAGAGTATGCGACACCGTTCACAACCGAATGGCAGAAAAGAGTCGGAGATTGAACTGGAGACTGTTGTTACTTCTAGTGATGCCAAGGATCAGAAGCCTGCCATAAAATATTTTAGTTTTGAGGACAACCGCCTGATGGATGGAAACTGGTTGATGGAGCCCAATCATGATGTTATTCTATTATTTTTCCGAATTTTAGCAATTTGTCACACTGCAATTCCCGAGCTGAATGAAGAGACTGGTAGTTTCACATATGAAGCAGAGTCCCCTGATGAAGGTGCTTTTCTTGTTGCAGCTAGAGAATTTGGTTTTGAATTTTGCAAGAGAACACAATCAAGTTTGGTCGTCCGTGAAAGATATCCTTCTACTGAACAAGTAGTTGAAAGGGAATACAAAATATTGAATCTTTTGGATTTCACAAGCAAAAGAAAGCGAATGTCTGTGATTGTTAGGGACGAGGACGGACAGATTCTTCTTCTCTGCAAAGGTGCTGATAGCATCATCTTTGATCGACTATCAAAGAATGGAAGAATGTATGAGGAATCAACCACCCGGCATTTGAATGAATATGGAGAAGCTGGATTGCGTACACTGGCACTTGCTTATAGAAAGCTCGAGGAGTCTGAATACACTGCTTGGAACAATGAGTTTCAAAAGGCCAAGACATCCATTGGGGGAGATAGAGAAGCAATGCTTGAGCGAGTTTCTGATCTCATGGAACGAGAGTTAACCCTTATTGGTGCTACTGCTGTGGAGGACAAGTTACAAAACGGGGTGCCCCAGTGCATAGACAAACTTGCGCAAGCTGGTCTTAAGATCTGGGTTCTGACAGGAGATAAGATGGAAACCGCCATCAACATAGGATTTGCATGTAGTTTACTACGACAGGGAATGAAGCAGATCTTCATAACATCAGCAAGCTCCGACAACTTAGCGAAGGATGGCAAAGAGGCCATGAAAGAGAATATTTTGAATCAAATCACCAATGCCTCACAAATGATCAAGCTGGAGAAGGATCCACATGCTGCATTTGCTTTAATTATTGATGGGAAGACCCTAACCTATGCTCTAGAGGATGATATGAAGCATCAATTCCTTGGACTAGCTGTTGATTGTGCATCGGTCATTTGCTGTCGCGTTTCTCCCAAGCAAAAGGCAATGGTAACTAGGTTAGTGAAAGAAGGTACTGGTAAAACCACTTTAGCAATTGGTGATGGTGCAAATGATGTTGGAATGATTCAAGAGGCTGATATCGGTGTTGGCATCAGTGGGGTTGAAGGTATGCAGGCTGTGATGGCCAGTGATTTCTCTATTGCTCAATTTCGATTTCTGGAAAGGCTTCTGGTAGTCCATGGACACTGGTGCTATAAGAGGATAGCACAAATGATTTGCTATTTCTTCTACAAGAATATTGCATTTGGATTAACCCTGTTCTACTTTGAAGCATTCACGGGATTTTCTGGTCAATCGATTTACGATGATTACTACATGCTATCATTTAACGTCATACTCACTTCATTACCTGTAATTTCTCTTGGAGTTTTCGAACAAGATGTCTCTTCTGAGGTGTGCCTTCAGTTTCCCGCACTGTATCAGCAAGGTCCCAGAAACTTGTTCTTTGACTGGTCCCGGATTTTTGGATGGATGGGGAATGCTCTCTATTCCTCTCTCGTAACATTCTTCCTCACGCTCATCATTTTCTACGATCAGGCATTCCGCGCTGGTGGTCAGACTGCCGATATGACTGCTGTAGGTACGACCATGTTTACTTCCATCATATGGGCCGTCAATTGCCAAATCGCCCTCACAATGAGCCATTTCACCTGGATCCAACACCTTCTCGTCTGGGGCAGCATTGGCATGTGGTATTTGTTTATCTTACTCTATGGAATGATGACTTCATCTGGGAATGCATATCAAATTTTTGTTGAAGCACTAGGCCCTGCCCCTGTTTATTGGGGAACAACCTTATTAGTAACAATTACATGCAATCTTCCATATCTGGCCCATATATCCTTTCAGAGAAGTTTTAATCCTTTGGATCATCATATCATCCAAGAAATCAAATACTACAGAAAGGATGTTGAAGATAAACACATGTGGACCAGGGAAAGATCTAAAGCAAGACAAAAGACCAAGATAGGGTTCACAGCCAGAGTAGAAGCAACGATCAGACAGTTGAGAGGAAGGCTGCAAAAGAAACACTCTTCCATGGGTGGGCATAATGCTATATCATGA 3675 42.15 MTRGRIREKLRRSHLYTFSCLRPSTNEIEEPNALSGPGFSRTVCCNQPHLHEKKPLKYCSNFISTTKYNVLTFLPKALFEQFRRVANLYFLLAALLSLTPVAPFSAMSMIAPLVFVVGLSMAKEALEDWRRFVQDMKVNLRKVMVHKGDGVFGYRPWHKIRVGDVLKVEKDQFFPADLLLLSSCYEDGICYVETMNLDGETNLKVKRSLEVTLPLDDDVTFKDFTGKIYCEDPNPNLYTFVGNLEYDRQLYPLDPNQILLRDSKLRNTAYAYGVVIFTGHDSKVMQNATKSPSKRSRIEKKMDKIIYILFTLLILISSISSIGFAVKTKYQMTDWWYLQTTGDDPMYSPSRPALSGLLHLITALILYGYLIPISLYVSIEVVKVLQASFMNQDIHMYDEETGNPARARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKSSIAGTAYGIRSSEVELAAARQMAIDLEDQDGEFPNFTAHKSMRHRSQPNGRKESEIELETVVTSSDAKDQKPAIKYFSFEDNRLMDGNWLMEPNHDVILLFFRILAICHTAIPELNEETGSFTYEAESPDEGAFLVAAREFGFEFCKRTQSSLVVRERYPSTEQVVEREYKILNLLDFTSKRKRMSVIVRDEDGQILLLCKGADSIIFDRLSKNGRMYEESTTRHLNEYGEAGLRTLALAYRKLEESEYTAWNNEFQKAKTSIGGDREAMLERVSDLMERELTLIGATAVEDKLQNGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQIFITSASSDNLAKDGKEAMKENILNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDMKHQFLGLAVDCASVICCRVSPKQKAMVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAFTGFSGQSIYDDYYMLSFNVILTSLPVISLGVFEQDVSSEVCLQFPALYQQGPRNLFFDWSRIFGWMGNALYSSLVTFFLTLIIFYDQAFRAGGQTADMTAVGTTMFTSIIWAVNCQIALTMSHFTWIQHLLVWGSIGMWYLFILLYGMMTSSGNAYQIFVEALGPAPVYWGTTLLVTITCNLPYLAHISFQRSFNPLDHHIIQEIKYYRKDVEDKHMWTRERSKARQKTKIGFTARVEATIRQLRGRLQKKHSSMGGHNAIS 1224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11291545 11296446 + evm.model.ptg000015l.1491 HCH4g1491 543735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1491 1224 SFLD Haloacid Dehalogenase 407 933 - -
HCH4g1491 1224 Gene3D - 593 724 IPR023299 GO:0000166(InterPro)
HCH4g1491 1224 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
HCH4g1491 1224 PRINTS P-type cation-transporting ATPase superfamily signature 882 901 - -
HCH4g1491 1224 FunFam Phospholipid-transporting ATPase 592 723 - -
HCH4g1491 1224 Coils Coil 449 469 - -
HCH4g1491 1224 ProSitePatterns E1-E2 ATPases phosphorylation site. 425 431 IPR018303 -
HCH4g1491 1224 SUPERFAMILY Calcium ATPase, transduction domain A 146 288 IPR008250 -
HCH4g1491 1224 SUPERFAMILY HAD-like 411 926 IPR036412 -
HCH4g1491 1224 Pfam Phospholipid-translocating P-type ATPase C-terminal 910 1158 IPR032630 -
HCH4g1491 1224 CDD P-type_ATPase_APLT_Dnf-like 60 1042 - -
HCH4g1491 1224 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 1149 IPR023298 -
HCH4g1491 1224 NCBIfam phospholipid-translocating P-type ATPase 58 1166 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
HCH4g1491 1224 Pfam Phospholipid-translocating ATPase N-terminal 44 110 IPR032631 -
HCH4g1491 1224 Gene3D - 118 291 - -
HCH4g1491 1224 NCBIfam HAD-IC family P-type ATPase 854 963 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH4g1491 1224 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 37 1172 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
HCH4g1491 1224 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 520 687 IPR023299 GO:0000166(InterPro)
HCH4g1491 1224 Pfam Cation transport ATPase (P-type) 547 653 - -
HCH4g1491 1224 FunFam Phospholipid-transporting ATPase 725 922 - -
HCH4g1491 1224 SFLD p-type atpase 407 933 IPR044492 -
HCH4g1491 1224 Gene3D - 725 922 IPR023214 -
HCH4g1491 1224 FunFam Phospholipid-transporting ATPase 119 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0823 HCH-Chr1:56880617 HCH4g1491 HCH-Chr4:11291545 0.00E+00 dispersed
HCH4g1491 HCH-Chr4:11291545 HCH9g0840 HCH-Chr9:5944635 2.30E-190 dispersed
HCH4g1491 HCH-Chr4:11291545 HCH3g0149 HCH-Chr3:953368 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1491 K01530 - csv:101221220 2169.04