Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1493 ATGGCAGGTTTAGCTCCAGAAGGATCCCAATTTGATTCTCGTCAATATGATACTAAAATGAATGAGATACTTTCTGCTGAAGGCCAGGATTTTTTCACCTCATATGATGAAGTTTACGACAGTTTTGATGCCATGGGGTTGCAAGAAAACCTCCTTAGAGGCATATATGCTTACGGTTTTGAGAAGCCTTCTGCAATTCAGCAAAGGGGTATTGTTCCCTTCTGCAAAGGTCTTGATGTGATTCAGCAGGCTCAATCTGGAACTGGGAAGACTGCAACATTCTGCTCTGGGATATTGCAGCAACTTGATTACGGTCTAGTCCAGTGCCAGGCTTTAGTTCTGGCACCAACTAGGGAACTGGCACAGCAAATCGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTTAAGGTTCATGCTTGTGTAGGAGGGACTAGTGTTCGGGAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTTGTAGTTGGAACACCTGGTCGTGTATTTGACATGTTAAGGAGACAGTCACTTCGCCCTGATTCCATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGTGGTTTTAAAGATCAGATTTATGATATTTTCCAGCTGTTGCCATCGAAAATTCAAGTTGGGGTATTCTCTGCCACGATGCCACCTGAAGCTTTGGAGATCACTAGGAAATTTATGAACAAGCCTGTTAGAATCTTAGTAAAACGTGATGAGCTCACTTTGGAGGGTATCAAACAGTTCTATGTTAATGTTGACAAGGATGAATGGAAGCTTGAAACTCTATGTGATCTTTATGAAACTCTGGCCATCACCCAAAGTGTCATCTTTGTCAACACACGTCGCAAGGTTGATTGGCTTACAGATAAGATGAGAAGCCGTGACCATACTGTATCTGCCACCCACGGTGATATGGACCAGAACACTCGAGATATAATCATGCGTGAATTCCGGTCCGGGTCATCTCGCGTTCTTATCACAACTGATTTATTGGCTCGTGGTATTGATGTTCAGCAAGTCTCTCTTGTGATAAATTATGATTTGCCAACCCAACCAGAAAATTACCTTCACCGAATCGGTCGAAGTGGACGTTTTGGAAGAAAAGGTGTTGCCATCAACTTCGTCACAACTGAAGACGAGAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTAGTCATTGAGGAGCTGCCAGCTAATGTTGCTGATCTCCTATGA 1242 42.75 MAGLAPEGSQFDSRQYDTKMNEILSAEGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKDEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11299365 11301282 - evm.model.ptg000015l.1493 HCH4g1493 543737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1493 413 CDD DEADc_EIF4A 44 242 - -
HCH4g1493 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
HCH4g1493 413 CDD SF2_C_DEAD 253 383 - -
HCH4g1493 413 Gene3D - 30 248 IPR027417 -
HCH4g1493 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
HCH4g1493 413 SMART helicmild6 293 374 IPR001650 -
HCH4g1493 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
HCH4g1493 413 FunFam Eukaryotic initiation factor 4A-III 248 413 - -
HCH4g1493 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724(InterPro)
HCH4g1493 413 SMART ultradead3 59 256 IPR014001 -
HCH4g1493 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
HCH4g1493 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
HCH4g1493 413 Pfam DEAD/DEAH box helicase 65 227 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
HCH4g1493 413 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 399 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
HCH4g1493 413 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
HCH4g1493 413 Gene3D - 249 413 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1493 HCH-Chr4:11299365 HCH6g0399 HCH-Chr6:7813549 2.30E-142 dispersed
HCH4g0433 HCH-Chr4:2828547 HCH4g1493 HCH-Chr4:11299365 2.20E-63 transposed
HCH4g0524 HCH-Chr4:3434713 HCH4g1493 HCH-Chr4:11299365 2.70E-226 wgd
HCH4g1493 HCH-Chr4:11299365 HCH6g0093 HCH-Chr6:1173756 7.00E-232 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1493 K03257 - csv:101223055 805.438