Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1495 ATGGCAAGTGTTGCTTCCATCGGTGATGATGAAACACCCGATTTCGCTTCGTCTTCATCCACCGTGATCGCTATTAACCGAGATAAGAATAGCCAATTTGCCGTTAAATGGGCTGTTGAAAACCTTTTCAACAAGAAGAGCAATGGACAATGCATTCTTATCCATGTCCGTAGCCAGACCTTGCATCCGCAGGATGTGGATACGGTTCCTAAAGAAGGTCATCCACCTAGTGAAGCAGAGTTGCATCAGTTCTTCCTTCCCTACCGAGGATTTTGCGCCAGAAAAGGGATCCTTGCTAAGGAAATTATCCTCCATGACATTGATGTTCCAAGTGCACTCATTGATTATGTTAGCAACCACTGCATTAGCAACATTGTTGTGGGTGCTTCCAGCAGGAATGCCATTGTCAGGAAGTTCAAAAATCCAGATGTACCAACAAGTTTACTCAAATCAACTCCAGATTCATGTTCTGTATATGTCATAGGTAGAGGAAAAGTTCAGAGTAAACGATTGGGTCATCGACTTAATTCTCATTCTGATGGGTCATACTCACCAAATGGAGGCTCACACTCACATATAGAAAGGACTCTATCGGTGGTAAAGCAGCGAACTTATCCTGATCTCTCGCTTTCTGAAGATAAAATCAGGAAACTGCAGATGGATGCCTATAATTCTGGCATTAGTAATGATTCAAGCAGACAATCGTCGGAGAGTTCCATATCAGGAAAATCTACTTATCTGAGTTCAATATCAGGCGTTAGCGACTTTTCAGGGCCACTCAGTTTCAAATCATTGGGTGCATCCTCTGAGATCTTGGATTTTTCCTTTACCTCAGAGTCTGGTTCCAAAAGTTCCACTTCCTCTCACACCCCATCTGCCTTGGAATCTGAGATGAGGAAATTGAGGTTTGAATTGAAACAGACCATGGAACTGTATGATTCAGCTTGCAAAGAAGCTGTAGAAGCAAAACGTAAGGCGAGAGAACTTCAACAGTTGAAGCTGCAAAAAGAAAAAAAGTTGGAGCTAGTTAAAAGTGGTGAAGACGCGGCGGTGGCCTTGGTAGAGGTTGAGAAGCAAAAAACTAAGGCCGCTACAGAAGCAGCGCAAATGGCACAAAGATTGGCAGAATTGGAGACCCAGAAAAGACAATATGCTGAAATGAAGGCTAGGAATGAGTCTGAGGAGAAGAGTAAAACAGTTAATTTGTTCGAACAAAATAGCATATGCTATAGACGATACACCATTGAAGAGATTGAAGTCGCAACCGACTATTTTAACGAGTCAAACAAGATTGGTGAGGGAGGGTATGGACCTGTTTACAAAGGCTTGCTTGAATATACTACCGTTGCCGTAAAGATCTTGAGGCCAGATAGATCACATGGTCAGAGACAATTCCAGCAAGAGATCGAGGTTTTAAGCCGCATGAGGCATCCTCACATGGTTCTCCTCTTAGGTGCCTGCCCAGAATATGGATGCCTTGTTTATGAGTACATGGAGAATGGAAGCTTAGATGACCGTCTTTTCCAAAGAGAGAACACTCCCCCAATCCCTTGGAGAACCCGTTTCAAAATTGCTTCTGATATAGCCACTGCCCTCCTCTTCCTTCATCAAATGAAGCCGGAACCTCTGGTTCACCGTGACCTTAAGCCAGCCAACATCCTCTTGGATCAAAACTATGTGAGCAAAATAGGCGATGTCGGTTTGGCCAGGCTAGTTCCACCATCGGTCGCAGATAGCGTCACTCAGTATCACATGACAGCTGCAGCAGGAACCTTCTGTTATATTGATCCAGAATACCAGCAAACAGGAATGTTGGGTGTGAAATCAGATATATACTCATTTGGTGTTCTGTTACTACAGCTCATCACTGCAAAGCCACCAATGGGTCTTTCATATCAGGTTGAGGAGGCCATTGAGCATGACAAGTTTACAGAAATGCTTGATCCCGCAGTGATTGATTGGCCGATTGAAGATGCTCTGGTGCTTGCTAAATTAGCCCTCAAGTGCTGTGAGCTAAGGAAGAGAGATAGGCCGGACCTCCGTACCGTTATATTGCCTGAACTGATTAGGCTGAGAAATGTTGGATTGAGCAATAACAGGTCTCTAAATACTAATTCTTCGCATGTTCACCGGACTTCTAACTCGGTTCCGCATATTCAGAAATCACCAGAAAATGAGGAAGGAATGAGAAACAATCCTAACGTGCCAATGGAAATTCAACGTAGATCAATGTGA 2235 43.76 MASVASIGDDETPDFASSSSTVIAINRDKNSQFAVKWAVENLFNKKSNGQCILIHVRSQTLHPQDVDTVPKEGHPPSEAELHQFFLPYRGFCARKGILAKEIILHDIDVPSALIDYVSNHCISNIVVGASSRNAIVRKFKNPDVPTSLLKSTPDSCSVYVIGRGKVQSKRLGHRLNSHSDGSYSPNGGSHSHIERTLSVVKQRTYPDLSLSEDKIRKLQMDAYNSGISNDSSRQSSESSISGKSTYLSSISGVSDFSGPLSFKSLGASSEILDFSFTSESGSKSSTSSHTPSALESEMRKLRFELKQTMELYDSACKEAVEAKRKARELQQLKLQKEKKLELVKSGEDAAVALVEVEKQKTKAATEAAQMAQRLAELETQKRQYAEMKARNESEEKSKTVNLFEQNSICYRRYTIEEIEVATDYFNESNKIGEGGYGPVYKGLLEYTTVAVKILRPDRSHGQRQFQQEIEVLSRMRHPHMVLLLGACPEYGCLVYEYMENGSLDDRLFQRENTPPIPWRTRFKIASDIATALLFLHQMKPEPLVHRDLKPANILLDQNYVSKIGDVGLARLVPPSVADSVTQYHMTAAAGTFCYIDPEYQQTGMLGVKSDIYSFGVLLLQLITAKPPMGLSYQVEEAIEHDKFTEMLDPAVIDWPIEDALVLAKLALKCCELRKRDRPDLRTVILPELIRLRNVGLSNNRSLNTNSSHVHRTSNSVPHIQKSPENEEGMRNNPNVPMEIQRRSM 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11307642 11312832 - evm.model.ptg000015l.1495 HCH4g1495 543739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1495 744 Gene3D HUPs 15 162 IPR014729 -
HCH4g1495 744 CDD STKc_IRAK 431 691 - -
HCH4g1495 744 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 22 161 - -
HCH4g1495 744 Coils Coil 312 342 - -
HCH4g1495 744 Pfam Protein tyrosine and serine/threonine kinase 428 683 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1495 744 CDD STK_N 20 164 - -
HCH4g1495 744 SUPERFAMILY Protein kinase-like (PK-like) 402 684 IPR011009 -
HCH4g1495 744 MobiDBLite consensus disorder prediction 170 191 - -
HCH4g1495 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 543 555 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1495 744 MobiDBLite consensus disorder prediction 700 744 - -
HCH4g1495 744 SMART serkin_6 425 689 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1495 744 MobiDBLite consensus disorder prediction 700 729 - -
HCH4g1495 744 Gene3D Transferase(Phosphotransferase) domain 1 498 708 - -
HCH4g1495 744 Gene3D Phosphorylase Kinase; domain 1 393 497 - -
HCH4g1495 744 ProSiteProfiles Protein kinase domain profile. 425 689 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1495 744 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 397 497 - -
HCH4g1495 744 MobiDBLite consensus disorder prediction 177 191 - -
HCH4g1495 744 FunFam U-box domain-containing protein 51 498 698 - -
HCH4g1495 744 Coils Coil 353 397 - -
HCH4g1495 744 PANTHER OS02G0152300 PROTEIN 23 710 IPR051348 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1495 HCH-Chr4:11307642 HCH7g0502 HCH-Chr7:3775906 5.90E-165 dispersed
HCH10g0548 HCH-Chr10:4428183 HCH4g1495 HCH-Chr4:11307642 9.00E-113 wgd
HCH4g0521 HCH-Chr4:3418413 HCH4g1495 HCH-Chr4:11307642 4.60E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81486 PF00069 Pkinase 7.10E-41 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1495 - - - 0.0