Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1500 ATGAATTTAGGTGCGGCGGAGGAAGAATCGCCGCAGGAGATTCATATTCCAGCTGAAATTGATTGGCAAATGTTAGATAAATCTAAATTTTTCTTTCTGGGTGCAGCCTTGTTTTCAGGTGTTTCGGCATCTCTTTACCCCGTTGTGGTATTGAAAACACGGCAACAGGTAGCTCATTCGCAACTTTCGTGCATTAGAACAGCGCTATCGCTTGTTCGGCACGAGGGTTTTCGAGCCCTGTATAGAGGATTTGGTACTTCCCTTATGGGGACTGTCCCTGCTAGAGCTCTATATATGGGTGCTCTTGAGGTTACAAAGAGTTATGTGGGGACTGCCACTATTAGAGTGGGATTTCCCGAAGCTACAGCCGCTACAATTGCCAATGCAGCTGCGGGGTTGAGTGCCGCAATGGCGGCACAGCTTGTGTGGACTCCCGTTGATGTTGTGAGTCAGAGACTAATGGTTCAGGGTAGTTGTAATTCTACTGCTCCCAATGCATCGGCCACTCGATATATTAATGGGATCGATGCGTTTAGGAAAATCCTCAATGCAGATGGTGTTAGAGGTCTTTACAGGGGTTTTGGAATATCAATTGTAACCTATGCACCATCTAATGCAGTGTGGTGGGCTTCATATTATGTTGCACAAAGACTGGTTTGGGGTGGAATTGGTTGTTATTCTGCTAAGAAAGTCGATGAAAGCAATGAAAATGGAAGTAACATTTACAGACCGGATTCGAAAACTGTGATAGCAGTTCAGGGTGCTAGTGCAGCTATGGCTGGTAGTATCTCAGCTTTAATAACAATGCCTCTTGATACAATCAAGACAAGATTGCAAGTTTTGGATGGAGATGAAAACGGTCGACGAGGACCAACCGTTGGACAGACTTTGAGAAATTTAATCAGGGAAGGTGGGTGGATGGCTTGTTACCGTGGTTTGGGACCTCGGTGTGCTTCGATGTCGATGTCTGCAACAACAATGATCACAACCTACGAGTTTCTGAAACGATTATCGACCAAGAATCAAGAGGGTTTAACAAGCTAA 1044 45.11 MNLGAAEEESPQEIHIPAEIDWQMLDKSKFFFLGAALFSGVSASLYPVVVLKTRQQVAHSQLSCIRTALSLVRHEGFRALYRGFGTSLMGTVPARALYMGALEVTKSYVGTATIRVGFPEATAATIANAAAGLSAAMAAQLVWTPVDVVSQRLMVQGSCNSTAPNASATRYINGIDAFRKILNADGVRGLYRGFGISIVTYAPSNAVWWASYYVAQRLVWGGIGCYSAKKVDESNENGSNIYRPDSKTVIAVQGASAAMAGSISALITMPLDTIKTRLQVLDGDENGRRGPTVGQTLRNLIREGGWMACYRGLGPRCASMSMSATTMITTYEFLKRLSTKNQEGLTS 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11418458 11419501 + evm.model.ptg000015l.1500 HCH4g1500 543744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1500 347 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 8 343 - -
HCH4g1500 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
HCH4g1500 347 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085(InterPro)
HCH4g1500 347 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085(InterPro)
HCH4g1500 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 248 337 IPR018108 -
HCH4g1500 347 Pfam Mitochondrial carrier protein 252 340 IPR018108 -
HCH4g1500 347 Pfam Mitochondrial carrier protein 36 110 IPR018108 -
HCH4g1500 347 Pfam Mitochondrial carrier protein 125 219 IPR018108 -
HCH4g1500 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 218 IPR018108 -
HCH4g1500 347 Gene3D Mitochondrial carrier domain 30 345 IPR023395 -
HCH4g1500 347 SUPERFAMILY Mitochondrial carrier 23 334 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0668 HCH-Chr13:5330930 HCH4g1500 HCH-Chr4:11418458 2.40E-70 dispersed
HCH4g1500 HCH-Chr4:11418458 HCH7g1002 HCH-Chr7:41001183 6.10E-64 dispersed
HCH12g0478 HCH-Chr12:2801697 HCH4g1500 HCH-Chr4:11418458 3.40E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1500 K15121 - csv:101210602 585.489