Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1501 ATGGAAGGAGATGGATCGTTACATAATCCTCGCACAGTTGAAGATGTTTTCAGTGATTTTAGTGGTCGTAGAAATGGCGTTATTAAAGCCCTCACTGTTGATGTCATCAAGTTCTATCAGCAATGTGATCCCGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGGGCAATGGGAAGTTAATTTACCTGCAGAAGAAGTACCACCAGAAATCCCAGAGCCTGCATTGGGTATTAATTTTGCAAGAGATGGCATGCGAGAAAATGATTGGTTAACTTTGGTTGCTGTCCATAGTGATGCTTGGCTGCTCTCCGTTGCCTTCTATTTTGGTGCTAGATTTGGATTCGACAGGTCTGATAGGAAACAGCTTTTCAATATGATAAATGAGTTACCAACTATTTTTGAAGTAGTCACAAGTTTTACAAAGAAACAAGTCAAGGAAAATCCATCGAGTGCCAATCATGGTAACAAGTCCAGGTCACATTTTAAACCACAGGAAGTAGAATCTGAAGGAATGTTATCAAGGCAGCCACATGCACAGCCAAGGGATGAGGACGAGGGCGTGTACGAAGAAGACGAGGATGAGCACGGAGAGACCTTATGTGGGGCGTGTGGCGAGAACTATGCATCAGATGAATTTTGGATTTGCTGCGATATCTGTGAAACGTGGTTCCATGGGAAATGTGTGAGAATAACCCCGGCTAAAGCGGAGCATATAAAGAAGTATAAGTGCCCATCCTGCAGCAACAACAAGAGAGCACGCTTCTAA 771 43.06 MEGDGSLHNPRTVEDVFSDFSGRRNGVIKALTVDVIKFYQQCDPEKENLCLYGFPNGQWEVNLPAEEVPPEIPEPALGINFARDGMRENDWLTLVAVHSDAWLLSVAFYFGARFGFDRSDRKQLFNMINELPTIFEVVTSFTKKQVKENPSSANHGNKSRSHFKPQEVESEGMLSRQPHAQPRDEDEGVYEEDEDEHGETLCGACGENYASDEFWICCDICETWFHGKCVRITPAKAEHIKKYKCPSCSNNKRARF 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11420387 11422610 - evm.model.ptg000015l.1501 HCH4g1501 543745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1501 256 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
HCH4g1501 256 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
HCH4g1501 256 CDD PHD_AL_plant 201 251 IPR044104 -
HCH4g1501 256 FunFam PHD finger alfin-like protein 194 250 - -
HCH4g1501 256 MobiDBLite consensus disorder prediction 146 193 - -
HCH4g1501 256 Pfam PHD-finger 202 248 IPR019787 -
HCH4g1501 256 Pfam Alfin 12 139 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
HCH4g1501 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 250 IPR013083 -
HCH4g1501 256 SUPERFAMILY FYVE/PHD zinc finger 191 252 IPR011011 -
HCH4g1501 256 SMART PHD_3 201 249 IPR001965 -
HCH4g1501 256 PANTHER CPG BINDING PROTEIN 9 255 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1501 K26274 - - csv:101222322 413.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0555 HCH-Chr10:4467845 HCH4g1501 HCH-Chr4:11420387 1.60E-104 wgd
HCH4g0514 HCH-Chr4:3390936 HCH4g1501 HCH-Chr4:11420387 1.10E-105 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH11g0791 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.5 2.1e-114 408.7
HCH10g0555 . 17 259 Alfin-like Transcription Factor Family AT1G14510 69.1 1.7e-95 345.9
HCH4g0514 . 9 254 Alfin-like Transcription Factor Family AT1G14510 68.7 2.4e-94 342.0
HCH4g1501 . 10 255 Alfin-like Transcription Factor Family AT1G14510 63.0 2.9e-87 318.5
HCH1g0364 . 8 235 Alfin-like Transcription Factor Family AT1G14510 61.3 3.8e-79 291.6
HCH11g0087 . 7 236 Alfin-like Transcription Factor Family AT1G14510 59.6 3.2e-78 288.5
HCH10g0555 . 9 261 Alfin-like Transcription Factor Family AT5G26210 74.3 7.1e-110 393.7
HCH4g0514 . 1 257 Alfin-like Transcription Factor Family AT5G26210 72.8 3.9e-108 387.9
HCH11g0791 . 9 254 Alfin-like Transcription Factor Family AT5G26210 74.9 1.9e-94 342.4
HCH4g1501 . 5 255 Alfin-like Transcription Factor Family AT5G26210 64.7 4.2e-94 341.3
HCH1g0364 . 7 240 Alfin-like Transcription Factor Family AT5G26210 59.9 1.3e-82 303.1
HCH11g0087 . 4 238 Alfin-like Transcription Factor Family AT5G26210 57.8 1.6e-80 296.2
HCH4g0514 . 1 257 Alfin-like Transcription Factor Family AT3G42790 68.6 7.8e-101 363.6
HCH10g0555 . 9 261 Alfin-like Transcription Factor Family AT3G42790 68.5 1.5e-99 359.4
HCH4g1501 . 1 255 Alfin-like Transcription Factor Family AT3G42790 63.1 4.3e-91 331.3
HCH11g0791 . 9 254 Alfin-like Transcription Factor Family AT3G42790 72.0 1.6e-90 329.3
HCH1g0364 . 7 240 Alfin-like Transcription Factor Family AT3G42790 61.1 4.7e-82 301.2
HCH11g0087 . 6 238 Alfin-like Transcription Factor Family AT3G42790 56.8 7.1e-78 287.3
HCH1g0364 . 1 241 Alfin-like Transcription Factor Family AT5G05610 80.2 2.0e-114 408.7
HCH11g0087 . 4 239 Alfin-like Transcription Factor Family AT5G05610 75.1 1.0e-105 379.8
HCH4g0514 . 8 256 Alfin-like Transcription Factor Family AT5G05610 65.2 4.9e-92 334.3
HCH10g0555 . 16 261 Alfin-like Transcription Factor Family AT5G05610 63.6 4.5e-90 327.8
HCH4g1501 . 9 252 Alfin-like Transcription Factor Family AT5G05610 63.5 5.9e-90 327.4
HCH11g0791 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 2.4e-83 305.4
HCH1g0364 . 43 241 Alfin-like Transcription Factor Family AT3G11200 82.2 2.4e-96 348.6
HCH11g0087 . 42 239 Alfin-like Transcription Factor Family AT3G11200 74.3 3.3e-85 311.6
HCH4g0514 . 44 256 Alfin-like Transcription Factor Family AT3G11200 63.7 4.0e-75 278.1
HCH10g0555 . 52 261 Alfin-like Transcription Factor Family AT3G11200 63.7 2.2e-73 272.3
HCH4g1501 . 45 248 Alfin-like Transcription Factor Family AT3G11200 61.7 2.3e-70 262.3
HCH11g0791 . 44 254 Alfin-like Transcription Factor Family AT3G11200 62.6 1.2e-68 256.5
HCH11g0791 . 1 161 Alfin-like Transcription Factor Family AT2G02470 87.0 4.2e-78 288.1
HCH10g0555 . 9 166 Alfin-like Transcription Factor Family AT2G02470 76.6 2.8e-66 248.8
HCH4g0514 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 2.0e-64 242.7
HCH4g1501 . 10 144 Alfin-like Transcription Factor Family AT2G02470 78.5 6.8e-60 227.6
HCH1g0364 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 5.6e-54 208.0
HCH11g0087 . 7 154 Alfin-like Transcription Factor Family AT2G02470 66.2 2.1e-53 206.1
HCH4g0514 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.6 4.7e-74 274.2
HCH10g0555 . 9 172 Alfin-like Transcription Factor Family AT5G20510 78.2 3.1e-73 271.6
HCH4g1501 . 1 164 Alfin-like Transcription Factor Family AT5G20510 73.3 4.3e-67 251.1
HCH11g0791 . 3 172 Alfin-like Transcription Factor Family AT5G20510 69.8 5.2e-65 244.2
HCH1g0364 . 7 157 Alfin-like Transcription Factor Family AT5G20510 64.3 9.2e-54 206.8
HCH11g0087 . 6 163 Alfin-like Transcription Factor Family AT5G20510 60.0 6.6e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33525 PF12165 Alfin 1.00E-66 No_clan HCH TF