Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1501 ATGGAAGGAGATGGATCGTTACATAATCCTCGCACAGTTGAAGATGTTTTCAGTGATTTTAGTGGTCGTAGAAATGGCGTTATTAAAGCCCTCACTGTTGATGTCATCAAGTTCTATCAGCAATGTGATCCCGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGGGCAATGGGAAGTTAATTTACCTGCAGAAGAAGTACCACCAGAAATCCCAGAGCCTGCATTGGGTATTAATTTTGCAAGAGATGGCATGCGAGAAAATGATTGGTTAACTTTGGTTGCTGTCCATAGTGATGCTTGGCTGCTCTCCGTTGCCTTCTATTTTGGTGCTAGATTTGGATTCGACAGGTCTGATAGGAAACAGCTTTTCAATATGATAAATGAGTTACCAACTATTTTTGAAGTAGTCACAAGTTTTACAAAGAAACAAGTCAAGGAAAATCCATCGAGTGCCAATCATGGTAACAAGTCCAGGTCACATTTTAAACCACAGGAAGTAGAATCTGAAGGAATGTTATCAAGGCAGCCACATGCACAGCCAAGGGATGAGGACGAGGGCGTGTACGAAGAAGACGAGGATGAGCACGGAGAGACCTTATGTGGGGCGTGTGGCGAGAACTATGCATCAGATGAATTTTGGATTTGCTGCGATATCTGTGAAACGTGGTTCCATGGGAAATGTGTGAGAATAACCCCGGCTAAAGCGGAGCATATAAAGAAGTATAAGTGCCCATCCTGCAGCAACAACAAGAGAGCACGCTTCTAA 771 43.06 MEGDGSLHNPRTVEDVFSDFSGRRNGVIKALTVDVIKFYQQCDPEKENLCLYGFPNGQWEVNLPAEEVPPEIPEPALGINFARDGMRENDWLTLVAVHSDAWLLSVAFYFGARFGFDRSDRKQLFNMINELPTIFEVVTSFTKKQVKENPSSANHGNKSRSHFKPQEVESEGMLSRQPHAQPRDEDEGVYEEDEDEHGETLCGACGENYASDEFWICCDICETWFHGKCVRITPAKAEHIKKYKCPSCSNNKRARF 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11420387 11422610 - evm.model.ptg000015l.1501 HCH4g1501 543745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1501 256 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
HCH4g1501 256 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
HCH4g1501 256 CDD PHD_AL_plant 201 251 IPR044104 -
HCH4g1501 256 FunFam PHD finger alfin-like protein 194 250 - -
HCH4g1501 256 MobiDBLite consensus disorder prediction 146 193 - -
HCH4g1501 256 Pfam PHD-finger 202 248 IPR019787 -
HCH4g1501 256 Pfam Alfin 12 139 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
HCH4g1501 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 250 IPR013083 -
HCH4g1501 256 SUPERFAMILY FYVE/PHD zinc finger 191 252 IPR011011 -
HCH4g1501 256 SMART PHD_3 201 249 IPR001965 -
HCH4g1501 256 PANTHER CPG BINDING PROTEIN 9 255 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0555 HCH-Chr10:4467845 HCH4g1501 HCH-Chr4:11420387 1.60E-104 wgd
HCH4g0514 HCH-Chr4:3390936 HCH4g1501 HCH-Chr4:11420387 1.10E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33525 PF12165 Alfin 1.00E-66 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1501 K26274 - csv:101222322 413.305