Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1510 ATGACCATGGAAGAGCAAGGGCCAAATCACCCTTCTGATCACATATTAGACTGGTTAGAGGATTCAGTTCCTTTCTTTTCTCCATTCCTGGATGAGACTAACGATTCCAATTCTATCAACTGCCATCAATGGTGGGATGAGAGTCATGAAGATATAGGCCAAGATCTGATTAATAGCTGTGTTACTTCTCTTGGAAGCCCCGCAACCACCACGGCCACTACTGTAAGTACTAGACCACCAAATACTACCACTTCTCCATCTGAATTGACCAAAAAAAGGAAAGCCCCAGATGACACAAGTCATCATAATACATCCCAATCCCATCAGAATCCAAGGAAAACCCAAATCAGTCAGAGCAAACAAGCAGCAATTGAACAAGTGGTGGTAGTAAAAAAATCGGTTGGGAACAAGAAAAATTCATCGAAGACCACAGGAAATAACTCTAATAATGGAAGTAACAAGGAAGGAAGTTGGGCAGAGCAATTACTTAACCCTTGCGCAATTGCTATCACCAAGGGAGATGTAACAAGAGTACATCACCTTCTTTGTGTACTACAAGAACTCGCCTCCCCGACCGGCGATGCTAATCATCGACTCGCTGCTTATGGTCTCCGAGCCCTCAACCAACACGGATCCTCCTCCAACTCATCCTCTTGTAGTTCTACCACAATTCCGCCCTTCACTTTCGCTTCCACTGACCCACGGTTCTTCCAACGGTCATTGATCAAATTCCACGAGGTAAGCCCATGGTTTGCCTTTCCTAATAACATTGCAAATTCCTCAATCCTCCAAATTCTCTCCGAAGAATCAAATCGCTCACGTAATCTCCACATTCTCGACATCGGGGTTTCTCACGGCGTGCAATGGCCAACACTACTCGAGGCCATGACTCGCCGTCCAGGCGGACCTCCGCCACTCGTTCGCCTAACAGTAATCACTCCCACACACAAAAATGACCAAAACACAGAAACACCATTTTCAATTGGTCCACCAGGAGACAATATCTCCTCTAGACTCCTCACTTTCGCCAAATCCCTAAACATCAATCTACAAATCAACCGTATAGATAATCACTCACTACAAACCCTAAATTCACAAATCATCAACAAATCCCCCAACGAAACCCTAATTGTCTGCGCACAATTCAGACTCCACGAACTAAAACACTCAGCTCCCGACGAACGAACATATTTCTTACAGAACCTAAGAAAAATGGAACCGAAAGCAGTGATTTTGAGCGAAAACAACATCGGATGTAGCTGCAATAATTGCAGCAATTTCTCAAAAAGCTTCAATAACAGAATAGAGCATTTATGGAGATTTCTAGAATCAACAAGCGCGGCATTCAAAGGAAGAGAAAGCGAAGAACGAAGAGTAATGGAAGGGGAAGCAGCGAAAGCGTTGATGAATGAGGGAGAAATGAATGAGGAAAAGGAGAAATGGTGTGAGAGAATGAAAAAAGTAGGGTTTGTGAGGAAATTATTTACAGAAGATGCCATTGATGGAGGTAGGGCTTTGATGAGGAGATATGATAGTAATTGGGAAATGAGAATGGAAGATAAAGATGGTGATGGATGTCTGGGATTATGGTGGAAAGGCCAACCAGTTTCTTTTTCTTCTTTTTGGATTTGA 1632 43.32 MTMEEQGPNHPSDHILDWLEDSVPFFSPFLDETNDSNSINCHQWWDESHEDIGQDLINSCVTSLGSPATTTATTVSTRPPNTTTSPSELTKKRKAPDDTSHHNTSQSHQNPRKTQISQSKQAAIEQVVVVKKSVGNKKNSSKTTGNNSNNGSNKEGSWAEQLLNPCAIAITKGDVTRVHHLLCVLQELASPTGDANHRLAAYGLRALNQHGSSSNSSSCSSTTIPPFTFASTDPRFFQRSLIKFHEVSPWFAFPNNIANSSILQILSEESNRSRNLHILDIGVSHGVQWPTLLEAMTRRPGGPPPLVRLTVITPTHKNDQNTETPFSIGPPGDNISSRLLTFAKSLNINLQINRIDNHSLQTLNSQIINKSPNETLIVCAQFRLHELKHSAPDERTYFLQNLRKMEPKAVILSENNIGCSCNNCSNFSKSFNNRIEHLWRFLESTSAAFKGRESEERRVMEGEAAKALMNEGEMNEEKEKWCERMKKVGFVRKLFTEDAIDGGRALMRRYDSNWEMRMEDKDGDGCLGLWWKGQPVSFSSFWI 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11524096 11525727 + evm.model.ptg000015l.1510 HCH4g1510 543754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1510 543 Pfam GRAS domain family 160 542 IPR005202 -
HCH4g1510 543 ProSiteProfiles GRAS family profile. 150 543 IPR005202 -
HCH4g1510 543 MobiDBLite consensus disorder prediction 133 157 - -
HCH4g1510 543 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 120 542 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH4g1510 543 MobiDBLite consensus disorder prediction 102 124 - -
HCH4g1510 543 MobiDBLite consensus disorder prediction 68 89 - -
HCH4g1510 543 MobiDBLite consensus disorder prediction 68 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1510 HCH-Chr4:11524096 HCH7g0209 HCH-Chr7:1426926 1.40E-30 dispersed
HCH4g1510 HCH-Chr4:11524096 HCH3g1373 HCH-Chr3:51501680 1.80E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33527 PF03514 GRAS 9.20E-75 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1510 K27744 - csv:101211590 763.837