Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1516 ATGGCTTTTAGAAAGCTTTTTTCACTGAAATTTTTCCTGCCCAGTTGTTTGATGAAGCCAAGGAAGCTTCTGGCAGGTCCTAGGAATCATCAATCTTCAGATTCTGATAAAAATTCTTTAAAAAAGATATCACTTTCTGATCTAAGTGCCATGTCATCCCTCTCTCTAATTAGTGATCTTTCTAACTCTTCTATTGGTTCAAACCTTCAAATTTTTACCTTCAAAGAGCTTAAGAATATAACAGAAAACTTCAACAAAAGCAATTATTTGGGTGAGGGTGGATTTGGACCTGTATATAAAGGGTTCATTGATGAGAATCTTAAGGCTGGATTGAAGGCACAGCATGTAGCTGTTAAAATCTTGGATTTGGATGGTTTTCAAGGCCATAGGGAGTGGTTGGCTGAAGTATTCTTTCTTGGGCAGTTAAGACACTCTAATCTTGTTAACTTGATTGGATATTGCCTTGAGGATGAGCAAAGGCTTCTTGTGTATGAATTCATGGAAGGTGGCAACTTAGAAAATCTACTGTTTAAAGGCTATGTTTCAAATTTGCCCTGGTTACAAAGGCTGAAGATTGCAATAGGAGCAGCAAAAGGCCTTGCTTTCCTCCACGATGCTGAGAAACCGGTTATTTATCGAGATTTCAAGGCTTCAAACATCTTATTAGACTCGGACTATAATGCCAAGCTTTCGGATTTCGGGCTGGCCACAGATGGTCCGGAAGGAGACGATACACACGTCACGACTCGTGTCATGGGGACCGAAGGCTATGCAGCTCCAGAATACATCATGACAGGTCATTTATCAACAATGAGTGATGTATTTAGCTTTGGGGTATTCTTACTAGAGTTACTAACTGGTAGGCGAGCGGTCGACAAGAGCCGTCCCAGCAGGGAGCAGAATCTTGTGCTTTGGGCAAGGCATCAATTGAAAGATCACCACAAACTTGAGAAAATAATTGATCCTAAGCTTGAGTGTCAATACTCAAATGAAGGAGCTAAAAAGTTGGCTTCCATAGCTTATCACTGCCTGAGCCACCACCCCAAATGCAGACCAACAATGCAATCAGTTGTCAAGGACCTAGAACCTGTCCTTGACATGAAAGATTTTCTCAGTGAACCCTTTGTTTACATTGTTCCTAATGAAGAGAAAAAGGAAGATTGTAAACTCAATGATAGAGAAGAATGTCAGATTGAATTTTGTGTAGACAAGAAGATGGCGAAGAGCCGCCATTGGGACCGGAAAGGTCGTCGGCATAGACACCGAGTCCCATCATCAAGATCAAGGTCTGGTGCTGTTCATTCTGATACAGCTTTGTACAAGACTCATGGAACCATTTCCCACTCTCCTAAACAAGCTACATTGGAGGGAAAGCACAAGGAAATAGTTTGA 1392 41.38 MAFRKLFSLKFFLPSCLMKPRKLLAGPRNHQSSDSDKNSLKKISLSDLSAMSSLSLISDLSNSSIGSNLQIFTFKELKNITENFNKSNYLGEGGFGPVYKGFIDENLKAGLKAQHVAVKILDLDGFQGHREWLAEVFFLGQLRHSNLVNLIGYCLEDEQRLLVYEFMEGGNLENLLFKGYVSNLPWLQRLKIAIGAAKGLAFLHDAEKPVIYRDFKASNILLDSDYNAKLSDFGLATDGPEGDDTHVTTRVMGTEGYAAPEYIMTGHLSTMSDVFSFGVFLLELLTGRRAVDKSRPSREQNLVLWARHQLKDHHKLEKIIDPKLECQYSNEGAKKLASIAYHCLSHHPKCRPTMQSVVKDLEPVLDMKDFLSEPFVYIVPNEEKKEDCKLNDREECQIEFCVDKKMAKSRHWDRKGRRHRHRVPSSRSRSGAVHSDTALYKTHGTISHSPKQATLEGKHKEIV 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11572474 11574221 + evm.model.ptg000015l.1516 HCH4g1516 543760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1516 463 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 167 373 - -
HCH4g1516 463 Pfam Protein tyrosine and serine/threonine kinase 87 361 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1516 463 ProSiteProfiles Protein kinase domain profile. 84 365 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1516 463 Gene3D Phosphorylase Kinase; domain 1 59 166 - -
HCH4g1516 463 FunFam Serine/threonine-protein kinase BIK1 31 166 - -
HCH4g1516 463 MobiDBLite consensus disorder prediction 412 427 - -
HCH4g1516 463 PANTHER OS01G0588500 PROTEIN-RELATED 62 365 IPR050823 -
HCH4g1516 463 CDD STKc_IRAK 90 363 - -
HCH4g1516 463 MobiDBLite consensus disorder prediction 428 452 - -
HCH4g1516 463 MobiDBLite consensus disorder prediction 412 463 - -
HCH4g1516 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1516 463 Gene3D Transferase(Phosphotransferase) domain 1 167 373 - -
HCH4g1516 463 SUPERFAMILY Protein kinase-like (PK-like) 60 361 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1516 HCH-Chr4:11572474 HCH6g1299 HCH-Chr6:47187652 3.90E-114 dispersed
HCH10g0571 HCH-Chr10:4586761 HCH4g1516 HCH-Chr4:11572474 7.60E-127 wgd
HCH12g0459 HCH-Chr12:2667416 HCH4g1516 HCH-Chr4:11572474 8.70E-113 wgd
HCH4g1516 HCH-Chr4:11572474 HCH8g0598 HCH-Chr8:42773162 1.10E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81487 PF07714 PK_Tyr_Ser-Thr 1.10E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1516 - - - 0.0