Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1548 ATGGCTCTTGTTCCAGTTTCCTTCTTCATCTCACTCCTCCTCCTCCTCCCACTTTCTTCTTCTTCTTCTTCTTTGAAGACCTTTATAGTCCAAGTTCATAAAGATTCCAAGCCTTCCATTTTCCCAACACATAAACACTGGTATGAATCATCTCTATCCTCTCTCTCAACTTCTAACAAACCTTCCATCATTCACACATATGAAACCATCTTCCATGGTTTCTCAGTGAAGCTCTCACCTTCAGAAGTTGAAAACCTTCAAACACTCCCCCATGTAATCTCCATCATTCCTGAACAGATTCGTCACCCTCACACAACTCGTTCTCCTGAGTTTCTCGGCCTTAAAACCTCAGACAGTGCTGGTTTGCTTAAGGAATCAGACTTCGGATCTGACCTTGTTATTGCTGTCATTGATACTGGTATTTGGCCTGAAAGACAAAGTTTTAACGATCGTGATCTGGGTCCTGTTCCTTCTAAATGGAAAGGTGTTTGTGTTTCTGGAAAAGACTTTCCTTCCACTTCTTGTAACCGTAAGCTTATAGGTGCTAGATTTTTCTGTAATGGGTATGAAGCTACTAATGGAAAAATGAATGAAACCACTGAGTTTCGTTCACCAAGAGATTCTGATGGTCATGGTACTCACACAGCTTCTATTGCTGCTGGTCGTTATGTTTTTCCAGCTTCTACTTTGGGTTATGCCCGTGGTAGAGCTGCTGGGATGGCCCCAAAAGCTCGCCTTGCTGCTTATAAGGTCTGCTGGAATGCTGGCTGCTATGATTCCGATATTCTAGCCGCATTCGACACCGCTGTCAGAGACGGTGTCGATGTAGTATCGCTTAGTGTTGGTGGTGTCGTTGTGCCTTATTATCTGGATGCCATTGCTATTGGTGCTTTTGGAGCTGTGGAGGAGGGTGTATTCGTCTCGGCATCGGCCGGGAATGGCGGTCCGGGCGGGCTTACTGTGACTAATGTGGCACCATGGGTTACTACAGTTGGAGCAGGGACTATGGATAGGGATTTTCCAGCTGATGTTAAGCTGGGGAATGGGAAGGTTATACTTGGTATGAGTGTTTATGGTGGACCGGGTTTGACACCGGGTCGTTTATACCCTTTGATTTATGCAGGGACTGAAGGGGGTGATGGATATTCATCTTCTTTATGTTTAGAAGGTTCATTGGACCCCAATTCAGTCAGAGGGAAGATAGTTTTATGTGATAGGGGTATCAATTCTAGGGCTGCAAAAGGCCAGGTTGTGAAAAAGGCAGGAGGAGTTGGAATGATTTTAGCAAATGGGGTCTTTGATGGTGAAGGTTTAGTTGCTGATTGTCATGTACTTCCCGCCACTGCTGTCGGTGCCACCTCTGGCGATGAGATTCGCAAGTACATTGCCGAAGCAGCGAAATCCATGTCACCACCAACGGCCACAATTGTGTTCAAGGGAACTCGGTTAGGAGTGAGGCCGGCACCTGTTGTTGCATCGTTTTCGGCTCGAGGTCCTAATCCAGAGTCCCCTGAGATCCTAAAGCCCGATGTGATCGCGCCCGGATTGAACATTCTTGCTGCTTGGCCTGATAAGATTGGTCCCTCTGGAATTCCTACAGACAAGCGCACCACAGAGTTCAACATTCTTTCAGGAACTTCCATGGCTTGTCCTCATGTCTCTGGTTTGGCTGCACTGCTCAAGGCAGCACACCCAGGATGGAGTCCAGCAGCTATAAAATCAGCTCTGATGACCACAGCTTACACGGTCGACAACCGGGCCGAGACGATGTTGGATGAATCTTCAGGCAACACTTCCACAGTACTAGACTTTGGAGCTGGTCATGTCCATCCACAAAAGGCAATGGACCCTGGTTTAATCTACGACTTGAACACATATGATTATGTTGATTTCTTGTGCAATTCCAACTACACAGCAAACAACATCCAAGTAATAACAAGGAAGATTGCAGATTGCAGCGGAGCGAAAAGGGCCGGTCATTCTGGAAATTTGAATTACCCTTCACTATCTGTGGTGTTTCAACAATATGGGAAGCATAAAATGTCCACACATTTCATAAGAACTGTAACCAATGTAGGGGAATCCAAATCCATCTACAAAGTTACAATAAAACCACCAACTGGAACTTTAGTATCAGTGGAGCCAGAAAAGCTTGTATTCAGAAGAAATGGTCAAAAACTGAGCTTCTTGGTTAGAGTCAAAGCCATGGCTATCAAGCTTTCCCCTGGAAGCTCAAGCATGAAGAGTGGCTCTATAATTTGGAGTGATGGAAAACACACTGTAACTAGTCCTTTGGTTGTCACTATGCAACAACCTCTGCAGTAA 2325 45.55 MALVPVSFFISLLLLLPLSSSSSSLKTFIVQVHKDSKPSIFPTHKHWYESSLSSLSTSNKPSIIHTYETIFHGFSVKLSPSEVENLQTLPHVISIIPEQIRHPHTTRSPEFLGLKTSDSAGLLKESDFGSDLVIAVIDTGIWPERQSFNDRDLGPVPSKWKGVCVSGKDFPSTSCNRKLIGARFFCNGYEATNGKMNETTEFRSPRDSDGHGTHTASIAAGRYVFPASTLGYARGRAAGMAPKARLAAYKVCWNAGCYDSDILAAFDTAVRDGVDVVSLSVGGVVVPYYLDAIAIGAFGAVEEGVFVSASAGNGGPGGLTVTNVAPWVTTVGAGTMDRDFPADVKLGNGKVILGMSVYGGPGLTPGRLYPLIYAGTEGGDGYSSSLCLEGSLDPNSVRGKIVLCDRGINSRAAKGQVVKKAGGVGMILANGVFDGEGLVADCHVLPATAVGATSGDEIRKYIAEAAKSMSPPTATIVFKGTRLGVRPAPVVASFSARGPNPESPEILKPDVIAPGLNILAAWPDKIGPSGIPTDKRTTEFNILSGTSMACPHVSGLAALLKAAHPGWSPAAIKSALMTTAYTVDNRAETMLDESSGNTSTVLDFGAGHVHPQKAMDPGLIYDLNTYDYVDFLCNSNYTANNIQVITRKIADCSGAKRAGHSGNLNYPSLSVVFQQYGKHKMSTHFIRTVTNVGESKSIYKVTIKPPTGTLVSVEPEKLVFRRNGQKLSFLVRVKAMAIKLSPGSSSMKSGSIIWSDGKHTVTSPLVVTMQQPLQ 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12004080 12006404 - evm.model.ptg000015l.1548 HCH4g1548 543792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1548 774 SUPERFAMILY Protease propeptides/inhibitors 27 102 - -
HCH4g1548 774 SUPERFAMILY Subtilisin-like 104 619 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH4g1548 774 FunFam p69E protein-like 632 770 - -
HCH4g1548 774 CDD PA_subtilisin_like 343 476 - -
HCH4g1548 774 FunFam Subtilisin-like protease SBT1.5 131 347 - -
HCH4g1548 774 PRINTS Subtilisin serine protease family (S8) signature 544 560 IPR015500 -
HCH4g1548 774 PRINTS Subtilisin serine protease family (S8) signature 129 148 IPR015500 -
HCH4g1548 774 PRINTS Subtilisin serine protease family (S8) signature 207 220 IPR015500 -
HCH4g1548 774 CDD Peptidases_S8_3 102 581 IPR034197 -
HCH4g1548 774 FunFam Subtilisin-like protease SBT1.9 17 104 - -
HCH4g1548 774 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 16 104 IPR037045 -
HCH4g1548 774 Pfam PA domain 369 458 IPR003137 -
HCH4g1548 774 ProSitePatterns Serine proteases, subtilase family, serine active site. 545 555 IPR023828 -
HCH4g1548 774 Pfam Fibronectin type-III domain 663 767 IPR041469 -
HCH4g1548 774 FunFam subtilisin-like protease SBT1.5 337 483 - -
HCH4g1548 774 SUPERFAMILY PA domain 394 459 IPR046450 -
HCH4g1548 774 Gene3D Peptidase S8/S53 domain 131 628 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH4g1548 774 ProSiteProfiles Serine proteases, subtilase domain profile. 108 615 - -
HCH4g1548 774 Gene3D - 632 770 - -
HCH4g1548 774 Pfam Subtilase family 129 596 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
HCH4g1548 774 Pfam Peptidase inhibitor I9 27 104 IPR010259 -
HCH4g1548 774 Gene3D - 337 484 - -
HCH4g1548 774 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 28 765 IPR045051 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1519 HCH-Chr4:11613993 HCH4g1548 HCH-Chr4:12004080 1.80E-201 dispersed
HCH4g1548 HCH-Chr4:12004080 HCH8g0597 HCH-Chr8:42753632 2.80E-202 dispersed
HCH4g1548 HCH-Chr4:12004080 HCH2g0544 HCH-Chr2:49248762 6.90E-233 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1548 - - - 0.0