Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1549 ATGGTGTTTCATTATCAAGTTGCTGCTAGATGCACTTGTAGGCTTCTTGCAATTCCCTCTGGGAGTGTTTCTGAAGATAAAAGTAAGAAGGATGATCTAGAGGGTCGGCTAAGATATCCGTTTCCTCAATTAGTTTCGTCGGGGCGCTTGGAGGTTCAGGTGCTACTAAATCCTAGTAAAGATGAATTTTGTAGAGTTATTGAGTCGTATAAACCGAACATTGTTTACTTACAAGGGGAAATACTTGAGAATGATGAAGTTGGTTCTTTAGTATGGGGAGATGTTGATCTGTCCACTGTTGAAGCAGTATGTGGGCTCTTTAGTTCTCCATTGCCTGCCACTGTGTATTTGGAAATAGAAAATGGCGAAGAAGTAGCCGATGCACTTTATTCCAAGGGTATTCCTTATGTCATTTATTGGAGAAACACGTTTTCTTGTTATGAAGCATGTCATTTTCGTAATGCATTCCTTTCAGTTGTCCAGAGTTCATCTGCTCATGCGTGGGATGCATTTCAACTTGCACGTGCTTCGTTTAAGGTGTATTGCTCAGGAAGCAACCTTGTCCTTCCTAAGAATAGTCAAAAAATTAGTGAAGATTTTGGACCATGTCTTCTGGGGGAACGTTTGATAATAATTGTTGAAGCCCTTGAGGAAGAGGCGGCTGATGATGAAGAAAATTCATTAGAAACTCCTCCTTCTGTCAGCATATATGATAATGATGTTGAAATGAGATTTCTCATGTGTGGGGAACCATACTCATTGGATGCTTACTTATTAGGAGCTTTGGAGGATGGTCTTAATGCCCTCTTGGACATTGAAATCCGGGGGAGCAAACTTCACGGCAAGTTTAGTGCCCCTCCTCCACCTCTTCAGGGAGAAACATTCTCTAATGGTGTTGTGACTATGCGCTGTGATGTATCAACATGCAGTTTTGCGCACATCTCACTTTTGGTGTCAGGCAGTGCACAAGCTTGTTTTGATGATCAGCTATTGGAAAATCATATAAAGAATGAGATTATTGAAAAAGGCCAACTAGTTCATACACTAGTAGACGACGAGGGAAGCAAACACCTTTTATCTGAGCCTCGGAAATCTGATTCAATTGCTTGTGGTGCTACAGTTTTTGAAATTAGCTTGAAGGTCCCTTTCTGGGCTTCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTAGCATTGGGCATTGCTAGCATTCAGGGTTTGCCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGGCTCCTTTTTTTCTGCTCAAGGAAGGAAAAAGATAAATTTCTGAACAATTTAACTGTTAGCACACTCCCTATCTGGTTGAAGCCGCCTGCTCCTAGAAAGAGATGTAAAAAGACGAAAGATGATTCTCATGATTTTCTTGAACATCTTAAGTCATCTTCCATTAGCAGAATAGATGATGAGAACATGGAAACTGGATTAATGAATGGTTTTAACACACCCATACTGCCAAGAAGGAGAAGAATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCACCCTAAACTGACGCATTTTCGGAGAATAGCTGAGACAGGTGGGCATGATGGAGGCTTAGTTAAAACTAGCCTTCCTCTCATTAATCCCACTAGGCATGTTACTGCAGGTTCAACTTCTGTTTCCCAAAAAATGTTTTCAAGTGCATCTCGATCTAAACAGATTATTCATTTGAATCCGCTACCTTTGAAGAAGCATGGTTGTGGCAGAATCCCAATACAGGCTTGCTTTGAGGAGGAGTTTTTGAAGGATTTGCTGCAGTTTCTTATTCTTCGAGGCCATAATCGACTCATTCCTCCAAGTGGGCTTGCCGAGTTTCCAGATGCGATACTCAACGGAAAGCGTCTTGACCTTTACAACTTATACAAGGAGGTGGTTTCAAGAGGTGGCTTTCGTGTTGGGAATGGCATTAATTGGAAAGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTTGGAAATACACTCAAAAGGCATTATGAAACTTATCTTCTTGAATACGAATTGGCACACGATGACGTAGACGGCGAATGTTGCCTGTTGTGTCACAGTAGTGCCGCGGGGGATTGGGTGAACTGTGGCATTTGTGGTGAGTGGGCTCACTTTGGTTGTGACAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGATTGGAATACATATGTCCACATTGTAGTGTTGCTAATTTTAAGAAGAAGAAACTTGCAAATGGGTTATCCTCTAAACCCATCTGA 2319 41.7 MVFHYQVAARCTCRLLAIPSGSVSEDKSKKDDLEGRLRYPFPQLVSSGRLEVQVLLNPSKDEFCRVIESYKPNIVYLQGEILENDEVGSLVWGDVDLSTVEAVCGLFSSPLPATVYLEIENGEEVADALYSKGIPYVIYWRNTFSCYEACHFRNAFLSVVQSSSAHAWDAFQLARASFKVYCSGSNLVLPKNSQKISEDFGPCLLGERLIIIVEALEEEAADDEENSLETPPSVSIYDNDVEMRFLMCGEPYSLDAYLLGALEDGLNALLDIEIRGSKLHGKFSAPPPPLQGETFSNGVVTMRCDVSTCSFAHISLLVSGSAQACFDDQLLENHIKNEIIEKGQLVHTLVDDEGSKHLLSEPRKSDSIACGATVFEISLKVPFWASQILRQLAPDVSYRSLVALGIASIQGLPVASFEKDDAERLLFFCSRKEKDKFLNNLTVSTLPIWLKPPAPRKRCKKTKDDSHDFLEHLKSSSISRIDDENMETGLMNGFNTPILPRRRRMKIAAMRPIPHVNHPKLTHFRRIAETGGHDGGLVKTSLPLINPTRHVTAGSTSVSQKMFSSASRSKQIIHLNPLPLKKHGCGRIPIQACFEEEFLKDLLQFLILRGHNRLIPPSGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANFKKKKLANGLSSKPI 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12016703 12022521 - evm.model.ptg000015l.1549 HCH4g1549 543793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1549 772 ProSiteProfiles ARID domain profile. 592 696 IPR001606 GO:0003677(InterPro)
HCH4g1549 772 Pfam ARID/BRIGHT DNA binding domain 595 692 IPR001606 GO:0003677(InterPro)
HCH4g1549 772 Gene3D - 590 695 IPR036431 GO:0003677(InterPro)
HCH4g1549 772 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 768 IPR042293 -
HCH4g1549 772 CDD ARID 595 692 - -
HCH4g1549 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 758 IPR013083 -
HCH4g1549 772 SUPERFAMILY FYVE/PHD zinc finger 695 761 IPR011011 -
HCH4g1549 772 SUPERFAMILY ARID-like 595 707 IPR036431 GO:0003677(InterPro)
HCH4g1549 772 CDD PHD_ARID4_like 702 753 - -
HCH4g1549 772 SMART ARID_2 589 692 - -
HCH4g1549 772 SMART bright_3 593 697 IPR001606 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1549 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1549 HCH-Chr4:12016703 HCH6g0039 HCH-Chr6:515318 4.4e-312 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH6g1418 . 28 367 ARID Transcription Factor Family AT1G04880 59.3 1.4e-105 380.2
HCH12g0028 . 74 352 ARID Transcription Factor Family AT1G20910 64.9 2.4e-101 365.9
HCH13g1287 . 212 477 ARID Transcription Factor Family AT1G20910 61.4 3.3e-90 328.9
HCH12g0090 . 18 313 ARID Transcription Factor Family AT1G76110 65.8 1.1e-110 396.7
HCH12g0028 . 58 382 ARID Transcription Factor Family AT1G76510 67.8 2.3e-124 442.6
HCH13g1287 . 187 507 ARID Transcription Factor Family AT1G76510 61.3 2.4e-110 396.0
HCH6g0920 . 53 335 ARID Transcription Factor Family AT3G13350 55.3 3.2e-83 305.4
HCH6g0039 . 2 773 ARID Transcription Factor Family AT3G43240 59.5 6.0e-266 913.7
HCH4g1549 . 2 766 ARID Transcription Factor Family AT3G43240 59.7 4.3e-264 907.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33532 PF01388 ARID 4.50E-15 CL0123 HCH TR