Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1549 ATGGTGTTTCATTATCAAGTTGCTGCTAGATGCACTTGTAGGCTTCTTGCAATTCCCTCTGGGAGTGTTTCTGAAGATAAAAGTAAGAAGGATGATCTAGAGGGTCGGCTAAGATATCCGTTTCCTCAATTAGTTTCGTCGGGGCGCTTGGAGGTTCAGGTGCTACTAAATCCTAGTAAAGATGAATTTTGTAGAGTTATTGAGTCGTATAAACCGAACATTGTTTACTTACAAGGGGAAATACTTGAGAATGATGAAGTTGGTTCTTTAGTATGGGGAGATGTTGATCTGTCCACTGTTGAAGCAGTATGTGGGCTCTTTAGTTCTCCATTGCCTGCCACTGTGTATTTGGAAATAGAAAATGGCGAAGAAGTAGCCGATGCACTTTATTCCAAGGGTATTCCTTATGTCATTTATTGGAGAAACACGTTTTCTTGTTATGAAGCATGTCATTTTCGTAATGCATTCCTTTCAGTTGTCCAGAGTTCATCTGCTCATGCGTGGGATGCATTTCAACTTGCACGTGCTTCGTTTAAGGTGTATTGCTCAGGAAGCAACCTTGTCCTTCCTAAGAATAGTCAAAAAATTAGTGAAGATTTTGGACCATGTCTTCTGGGGGAACGTTTGATAATAATTGTTGAAGCCCTTGAGGAAGAGGCGGCTGATGATGAAGAAAATTCATTAGAAACTCCTCCTTCTGTCAGCATATATGATAATGATGTTGAAATGAGATTTCTCATGTGTGGGGAACCATACTCATTGGATGCTTACTTATTAGGAGCTTTGGAGGATGGTCTTAATGCCCTCTTGGACATTGAAATCCGGGGGAGCAAACTTCACGGCAAGTTTAGTGCCCCTCCTCCACCTCTTCAGGGAGAAACATTCTCTAATGGTGTTGTGACTATGCGCTGTGATGTATCAACATGCAGTTTTGCGCACATCTCACTTTTGGTGTCAGGCAGTGCACAAGCTTGTTTTGATGATCAGCTATTGGAAAATCATATAAAGAATGAGATTATTGAAAAAGGCCAACTAGTTCATACACTAGTAGACGACGAGGGAAGCAAACACCTTTTATCTGAGCCTCGGAAATCTGATTCAATTGCTTGTGGTGCTACAGTTTTTGAAATTAGCTTGAAGGTCCCTTTCTGGGCTTCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTAGCATTGGGCATTGCTAGCATTCAGGGTTTGCCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGGCTCCTTTTTTTCTGCTCAAGGAAGGAAAAAGATAAATTTCTGAACAATTTAACTGTTAGCACACTCCCTATCTGGTTGAAGCCGCCTGCTCCTAGAAAGAGATGTAAAAAGACGAAAGATGATTCTCATGATTTTCTTGAACATCTTAAGTCATCTTCCATTAGCAGAATAGATGATGAGAACATGGAAACTGGATTAATGAATGGTTTTAACACACCCATACTGCCAAGAAGGAGAAGAATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCACCCTAAACTGACGCATTTTCGGAGAATAGCTGAGACAGGTGGGCATGATGGAGGCTTAGTTAAAACTAGCCTTCCTCTCATTAATCCCACTAGGCATGTTACTGCAGGTTCAACTTCTGTTTCCCAAAAAATGTTTTCAAGTGCATCTCGATCTAAACAGATTATTCATTTGAATCCGCTACCTTTGAAGAAGCATGGTTGTGGCAGAATCCCAATACAGGCTTGCTTTGAGGAGGAGTTTTTGAAGGATTTGCTGCAGTTTCTTATTCTTCGAGGCCATAATCGACTCATTCCTCCAAGTGGGCTTGCCGAGTTTCCAGATGCGATACTCAACGGAAAGCGTCTTGACCTTTACAACTTATACAAGGAGGTGGTTTCAAGAGGTGGCTTTCGTGTTGGGAATGGCATTAATTGGAAAGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTTGGAAATACACTCAAAAGGCATTATGAAACTTATCTTCTTGAATACGAATTGGCACACGATGACGTAGACGGCGAATGTTGCCTGTTGTGTCACAGTAGTGCCGCGGGGGATTGGGTGAACTGTGGCATTTGTGGTGAGTGGGCTCACTTTGGTTGTGACAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGATTGGAATACATATGTCCACATTGTAGTGTTGCTAATTTTAAGAAGAAGAAACTTGCAAATGGGTTATCCTCTAAACCCATCTGA 2319 41.7 MVFHYQVAARCTCRLLAIPSGSVSEDKSKKDDLEGRLRYPFPQLVSSGRLEVQVLLNPSKDEFCRVIESYKPNIVYLQGEILENDEVGSLVWGDVDLSTVEAVCGLFSSPLPATVYLEIENGEEVADALYSKGIPYVIYWRNTFSCYEACHFRNAFLSVVQSSSAHAWDAFQLARASFKVYCSGSNLVLPKNSQKISEDFGPCLLGERLIIIVEALEEEAADDEENSLETPPSVSIYDNDVEMRFLMCGEPYSLDAYLLGALEDGLNALLDIEIRGSKLHGKFSAPPPPLQGETFSNGVVTMRCDVSTCSFAHISLLVSGSAQACFDDQLLENHIKNEIIEKGQLVHTLVDDEGSKHLLSEPRKSDSIACGATVFEISLKVPFWASQILRQLAPDVSYRSLVALGIASIQGLPVASFEKDDAERLLFFCSRKEKDKFLNNLTVSTLPIWLKPPAPRKRCKKTKDDSHDFLEHLKSSSISRIDDENMETGLMNGFNTPILPRRRRMKIAAMRPIPHVNHPKLTHFRRIAETGGHDGGLVKTSLPLINPTRHVTAGSTSVSQKMFSSASRSKQIIHLNPLPLKKHGCGRIPIQACFEEEFLKDLLQFLILRGHNRLIPPSGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANFKKKKLANGLSSKPI 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12016703 12022521 - evm.model.ptg000015l.1549 HCH4g1549 543793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1549 772 ProSiteProfiles ARID domain profile. 592 696 IPR001606 GO:0003677(InterPro)
HCH4g1549 772 Pfam ARID/BRIGHT DNA binding domain 595 692 IPR001606 GO:0003677(InterPro)
HCH4g1549 772 Gene3D - 590 695 IPR036431 GO:0003677(InterPro)
HCH4g1549 772 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 768 IPR042293 -
HCH4g1549 772 CDD ARID 595 692 - -
HCH4g1549 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 758 IPR013083 -
HCH4g1549 772 SUPERFAMILY FYVE/PHD zinc finger 695 761 IPR011011 -
HCH4g1549 772 SUPERFAMILY ARID-like 595 707 IPR036431 GO:0003677(InterPro)
HCH4g1549 772 CDD PHD_ARID4_like 702 753 - -
HCH4g1549 772 SMART ARID_2 589 692 - -
HCH4g1549 772 SMART bright_3 593 697 IPR001606 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1549 HCH-Chr4:12016703 HCH6g0039 HCH-Chr6:515318 4.4e-312 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33532 PF01388 ARID 4.50E-15 CL0123 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1549 - - - 0.0