Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1556 ATGGAAAAACCGATTGTCGGAATCTCAAACTCCGACAACCCCAACAAAACCAACAACAAAAGGAAGAAGCTGCTTTTATGTCTCTCTGCAACTCTTCTCCTCGTCGGAGCCATCATCGGCACCGTCGCCGGAGTAACCAAATCCAAAAACTCAAACCAAAATTCTCAAGCTCACACCATTCTCAAAACCTCATGCCACAGCACTCTCTACCCAGATCTCTGCTTCTCCACCGTTTCCTCATCGCAGGAATCCATGAAAAAAATCTCCAACCAAAAAGACGTCATTGAAATCTCCATCAACATCACGACCAAAGCCGTGGAAGAAAATTATTTCACAGTGAAAAAGCTTTATGAGCTCAAGAACATTACTCACAGGGAGAAGATAGCTCTTCACGATTGCTTGGAAACGATCGACGAGACGCTTGATGAGCTTCATGAGGCTATTGTTGATCTCCATTTATATCCCAACAAGAAATCTCTGAGCCAGCATGCTGATGATCTTAAAACGTTGCTTAGTTCTGCCATTACAAATCAGGAAACTTGCATTGATGGATTTTCTCACGACGGTGCTGATAAAAGCTTGAGGAAGAAGCTGCTTGAAGGACAGATCGAAGTGGAGCATATGTGTAGTAACGTGCTTGCTATGATTAAGAATATGACGGATACGGATATTGCTAATTATGAGAGAAAGATGGGTAGAAAACTCAAGGAGGAAGATAGAGAAACCGATGATGATATCAAGTGGCCGGAGTGGTTATCGACCGGGGACAGGAGGCTTCTTCAGTCATCGTCCGTGACACAGGATGTGGTGGTGGCTGCTGACGGAAGTGGAGATTTTCGGACGGTGGCTGCGGCGGTGGCTGCTGCTCCGACGAAAAGCAGTAAGAGACATGTAATCAGAATAAAGGCCGGAGTTTACAGGGAAAATGTGGAAGTGCCGAAGTCGAAAACGAACATAATGTTCATCGGAGAAGGAAGAACCAGAACCATCATCACCGGACGTAAGAATGTGGTTGATGGAAGCACCACTTTCAATTCCGCTACCGTCGCGGCGGTCGGCGGAGGATTCCTTGCACGTGACATAACGTTCGAAAACACAGCCGGTCCTTCAAAACACCAAGCAGTCGCTCTCCGTGTCGGATCCGACCTCTCCGCCTTCTATCAATGCGACATCCTCGCTTATCAAGACACTCTCTACGTTCATTCCAACCGTCAATTCTTCATCAACTGTCTCATCGCCGGCACCGTCGATTTCATCTTCGGTAACGCCGCGGTAGTCCTCCAAGACTGCGATATCCACGCCCGCCGACCAAACTCCGGCCAGAAAAACATGGTCACAGCCCAAGGCAGATCCGACCCAAATCAAAACACCGGCATCGTGATCCAAAAATGCCGGATCGGTTCCACGTCGGATCTCCGACCCGTTCAGAGAAATTTTCCGACTTTCCTCGGAAGGCCGTGGAAGGAATATTCAAGAACGGTGATAATGCAGTCGACGATTAGTGATGTTATTGATTCTAAAGGGTGGCATGAATGGAGTGGGAGCTTTGCTCTTAACACGTTGTTTTACGGTGAGTATCAGAATACCGGTGCCGGGGCGGCGACAGGGGGGAGGGTGACGTGGAAGGGGTTTAGAGTTATTAGGAGTGCGACGGAGGCTCAGGGTTTTACTGCGGGGAGATTTATTGGTGGTGGGAGTTGGTTGAGAGCCTCTGGTTTTCCTTTCTCTCTTGATTTGTAG 1740 48.16 MEKPIVGISNSDNPNKTNNKRKKLLLCLSATLLLVGAIIGTVAGVTKSKNSNQNSQAHTILKTSCHSTLYPDLCFSTVSSSQESMKKISNQKDVIEISINITTKAVEENYFTVKKLYELKNITHREKIALHDCLETIDETLDELHEAIVDLHLYPNKKSLSQHADDLKTLLSSAITNQETCIDGFSHDGADKSLRKKLLEGQIEVEHMCSNVLAMIKNMTDTDIANYERKMGRKLKEEDRETDDDIKWPEWLSTGDRRLLQSSSVTQDVVVAADGSGDFRTVAAAVAAAPTKSSKRHVIRIKAGVYRENVEVPKSKTNIMFIGEGRTRTIITGRKNVVDGSTTFNSATVAAVGGGFLARDITFENTAGPSKHQAVALRVGSDLSAFYQCDILAYQDTLYVHSNRQFFINCLIAGTVDFIFGNAAVVLQDCDIHARRPNSGQKNMVTAQGRSDPNQNTGIVIQKCRIGSTSDLRPVQRNFPTFLGRPWKEYSRTVIMQSTISDVIDSKGWHEWSGSFALNTLFYGEYQNTGAGAATGGRVTWKGFRVIRSATEAQGFTAGRFIGGGSWLRASGFPFSLDL 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12094256 12097610 - evm.model.ptg000015l.1556 HCH4g1556 543800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1556 579 Pfam Plant invertase/pectin methylesterase inhibitor 60 215 IPR006501 GO:0004857(InterPro)
HCH4g1556 579 NCBIfam pectinesterase inhibitor domain 39 219 IPR006501 GO:0004857(InterPro)
HCH4g1556 579 FunFam Pectinesterase 57 220 - -
HCH4g1556 579 ProSitePatterns Pectinesterase signature 1. 293 312 IPR018040 -
HCH4g1556 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 220 IPR035513 -
HCH4g1556 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 220 IPR035513 -
HCH4g1556 579 CDD PMEI-like_3 63 220 - -
HCH4g1556 579 FunFam Pectinesterase 262 579 - -
HCH4g1556 579 Pfam Pectinesterase 268 564 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH4g1556 579 SMART PMEI_2 56 215 IPR006501 GO:0004857(InterPro)
HCH4g1556 579 SUPERFAMILY Pectin lyase-like 265 578 IPR011050 -
HCH4g1556 579 PANTHER PECTINESTERASE 27 569 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH4g1556 579 Gene3D - 262 579 IPR012334 -
HCH4g1556 579 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1556 HCH-Chr4:12094256 HCH5g0877 HCH-Chr5:7247690 3.30E-123 dispersed
HCH4g1556 HCH-Chr4:12094256 HCH6g0034 HCH-Chr6:485787 1.00E-233 wgd
HCH4g1556 HCH-Chr4:12094256 HCH8g0577 HCH-Chr8:42586629 2.50E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1556 K01051 - csv:101212388 915.99