Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1561 ATGGATTGGAGATGGAGAGAGCTAGTGTCTCTCTTCCTTGTTTGCATTGTGGGGTTGAAGCCCACTTCCATTAATGGAGCTACAGATCCAGGAGATGCTTCTGCTTTAAGAGTTTTATACAGCAGCTTAAACTCGCCACAACAATTAACCCAGTGGAACGCAAATGGTGATGATCCATGTGGACAATCTTGGAAGGGGATTACTTGCTCTGGCTCACGGGTTACAGAAATAAACTTATCTGGCCTTGGGCTTAGTGGATCTCTAGGATATCAGCTATCAAGTTTGACATCGTTAACTAAGCTAGATATGAGCAATAACAATATTGGAGGCGAGATAGTTTATCAACTTCCACCAAACCTGCAGATATTAAATCTTGCGCGAAACAACTTCAATAAAGGCCTCCCTTACTCCATTTCCTTGATGACTACTCTCCAATACTTAGATATCAGCCATAATCAGCTTCAGGATTCACTGATTGATATGTATGGGCAGCTTACTTCCCTCTCCACATTGGATCTATCATTTAATTCTCTGTCGGGCAACCTCCCTCAGAGTTTTAGCTCCCTTTCTAGCCTCAACACCATGTATTTGCAAAACAACCAGTTCACTGGCACAATTGATGTCCTTGCAAATCTTCCTCTTGAAAACCTGAATGTTGAAAATAACCGTTTCACTGGTTGGATCCCTGAACAACTGAAAAACATCAATCTGCAGAAAAATGGGAACTCTTGGAGCTCAGGTCCTGCACCCCCTCCACCACCTGGTACACCTCCAGCCACCAAAACGGACCAAAATCGCAATGCTGGTAGAAACAATTCAAATCGCGGTTCTGATAAAGGTGGAAAATCAGGAATTGGTGGTGGTGCCATTGCAGGAATTATCATCTCTGTGCTAGTTGTTGGAGCCATAGCAGCATTCTTTCTCGTCAGAAGGAAATCCAAGAGATCATCTTCAGACATAGAAAAGCTTGACAACCAACCTTTGCAACCTCTTAATTTGAATGAAACACAAGAAATGAAATCTATGGAGACTTCCTCCGCATTCTATCCAACAACATTTGATACTTCTGCTGCAATCAATCTTAAACCCCCACCAGTTGATCGTCATAAATCATTTGATGAGGAAGACTTCTCAAAAAAAGCTGTCGCTGTTGTTGCCAAGAAGAAGGCTAGTGCAGCTCCTATTAACGTGAAATCATATTCAATAGCAGACCTGCAAATGGCTACAGGCAGTTTTAGTGTTGACAATCTTCTTGGTGAGGGATCATTTGGACGTGTTTATCGGGCTGAGTTTGATGATGGCAAGGTTCTTGCTGTGAAGAAAATAGATTCATCTGCCTTACCTAGGGAATTATCTGAAGATTTCACGGAGATTGTTTCACAAGTCTCTCTGTTACACCATCCCAATATAACTGAGCTTGTGGGTTATTGCTCAGAGCATGGCCAGCATCTGCTTGTATATGAGTTCCATAAAAATGGCTCGCTTTATGACTTTTTGCATCTATCAGATGAATATAACAAGCCTCTGACGTGGAATTCACGCGTGAAGATTGCTTTGGGGACAGCACGTGCATTAGAGTATCTTCACGAAGTTTGTTCCCCATCAATTGTTCATAGAAATATTAAGTCTGCCAACATATTACTGGATGTGGAACTAAGTCCCCACCTTTCGGATTCAGGACTGGGAAGCTTTGTACCAAACGCAGATCAGGCGTTGGATCACAATGCGGGATCAGGATACAGTGGCCCCGAGGTTACCATGTCTGGCCAATATACTCTGAAAAGCGATGTCTATAGTTTTGGAGTAGTCATGTTAGAGCTGCTTACTGGACGCAAACCATTTGATAGTTCTAGGCCGAGATCTGAGCAATCTTTGGTTCGATGGGCTACACCTCAGCTCCATGACATTGATGCTTTGACCAAAATGGTTGATCCAGAACTCAAGGGGCTCTACCCAGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCACTTTGCGTCCAGACTGAACCTGAGTTCCGACCTCCAATGTCAGAGGTGGTTGAAGCATTGGTCCGCCTCGTGCAGCGAGCTAACATGAGTAAGAGAACATTTGGAAATGACAATATAACCTCTCCAAGAGGTGAAAACACAGGTGGGGAGGACACACCATAA 2154 43.41 MDWRWRELVSLFLVCIVGLKPTSINGATDPGDASALRVLYSSLNSPQQLTQWNANGDDPCGQSWKGITCSGSRVTEINLSGLGLSGSLGYQLSSLTSLTKLDMSNNNIGGEIVYQLPPNLQILNLARNNFNKGLPYSISLMTTLQYLDISHNQLQDSLIDMYGQLTSLSTLDLSFNSLSGNLPQSFSSLSSLNTMYLQNNQFTGTIDVLANLPLENLNVENNRFTGWIPEQLKNINLQKNGNSWSSGPAPPPPPGTPPATKTDQNRNAGRNNSNRGSDKGGKSGIGGGAIAGIIISVLVVGAIAAFFLVRRKSKRSSSDIEKLDNQPLQPLNLNETQEMKSMETSSAFYPTTFDTSAAINLKPPPVDRHKSFDEEDFSKKAVAVVAKKKASAAPINVKSYSIADLQMATGSFSVDNLLGEGSFGRVYRAEFDDGKVLAVKKIDSSALPRELSEDFTEIVSQVSLLHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDFLHLSDEYNKPLTWNSRVKIALGTARALEYLHEVCSPSIVHRNIKSANILLDVELSPHLSDSGLGSFVPNADQALDHNAGSGYSGPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRPRSEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTFGNDNITSPRGENTGGEDTP 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12183257 12190945 - evm.model.ptg000015l.1561 HCH4g1561 543805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1561 717 MobiDBLite consensus disorder prediction 697 717 - -
HCH4g1561 717 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
HCH4g1561 717 ProSiteProfiles Protein kinase domain profile. 412 687 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1561 717 Gene3D Transferase(Phosphotransferase) domain 1 491 706 - -
HCH4g1561 717 Gene3D Ribonuclease Inhibitor 29 253 IPR032675 -
HCH4g1561 717 Pfam Protein tyrosine and serine/threonine kinase 414 684 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1561 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 490 698 - -
HCH4g1561 717 Pfam Leucine Rich Repeat 214 234 IPR001611 GO:0005515(InterPro)
HCH4g1561 717 Pfam Leucine Rich Repeat 119 139 IPR001611 GO:0005515(InterPro)
HCH4g1561 717 Pfam Leucine Rich Repeat 167 189 IPR001611 GO:0005515(InterPro)
HCH4g1561 717 Pfam Leucine Rich repeat 142 156 IPR001611 GO:0005515(InterPro)
HCH4g1561 717 Pfam Leucine Rich repeat 95 113 IPR001611 GO:0005515(InterPro)
HCH4g1561 717 ProSitePatterns Protein kinases ATP-binding region signature. 418 441 IPR017441 GO:0005524(InterPro)
HCH4g1561 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 255 - -
HCH4g1561 717 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 374 489 - -
HCH4g1561 717 SUPERFAMILY Protein kinase-like (PK-like) 394 684 IPR011009 -
HCH4g1561 717 Gene3D Phosphorylase Kinase; domain 1 374 489 - -
HCH4g1561 717 CDD STKc_IRAK 418 687 - -
HCH4g1561 717 PRINTS Leucine-rich repeat signature 144 157 - -
HCH4g1561 717 PRINTS Leucine-rich repeat signature 165 178 - -
HCH4g1561 717 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 163 689 IPR046959 -
HCH4g1561 717 SUPERFAMILY L domain-like 28 234 - -
HCH4g1561 717 MobiDBLite consensus disorder prediction 260 279 - -
HCH4g1561 717 MobiDBLite consensus disorder prediction 238 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1561 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0962 HCH-Chr3:9299332 HCH4g1561 HCH-Chr4:12183257 2.70E-135 dispersed
HCH4g1561 HCH-Chr4:12183257 HCH7g0172 HCH-Chr7:1136776 2.70E-98 dispersed
HCH7g0637 HCH-Chr7:6230480 HCH4g1561 HCH-Chr4:12183257 3.00E-06 transposed
HCH4g1561 HCH-Chr4:12183257 HCH6g0029 HCH-Chr6:457729 5.60E-229 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g0172 . 35 796 Strubbelig Receptor Gene Family AT4G03390 65.2 7.5e-219 757.3
HCH14g0886 . 17 739 Strubbelig Receptor Gene Family AT4G03390 54.2 5.4e-169 591.7
HCH4g1561 . 396 690 Strubbelig Receptor Gene Family AT4G03390 58.5 1.1e-92 338.2
HCH11g0581 . 5 735 Strubbelig Receptor Gene Family AT5G06820 54.9 6.2e-191 664.5
HCH6g0029 . 30 702 Strubbelig Receptor Gene Family AT1G78980 50.5 6.4e-145 511.5
HCH4g1561 . 22 693 Strubbelig Receptor Gene Family AT1G78980 52.1 4.5e-130 462.2
HCH4g1561 . 6 688 Strubbelig Receptor Gene Family AT3G13065 51.5 1.2e-111 401.0
HCH4g1561 . 386 688 Strubbelig Receptor Gene Family AT1G11130 51.8 9.6e-85 311.6
HCH3g0962 . 385 678 Strubbelig Receptor Gene Family AT1G11130 52.7 3.7e-84 309.7
HCH6g0029 . 409 697 Strubbelig Receptor Gene Family AT1G11130 51.9 6.9e-83 305.4
HCH11g0581 . 5 735 Strubbelig Receptor Gene Family AT5G06820 54.9 6.2e-191 664.5
HCH7g0172 . 35 796 Strubbelig Receptor Gene Family AT4G03390 65.2 7.5e-219 757.3
HCH14g0886 . 17 739 Strubbelig Receptor Gene Family AT4G03390 54.2 5.4e-169 591.7
HCH4g1561 . 396 690 Strubbelig Receptor Gene Family AT4G03390 58.5 1.1e-92 338.2
HCH4g1561 . 6 688 Strubbelig Receptor Gene Family AT3G13065 51.5 1.2e-111 401.0
HCH6g0029 . 30 702 Strubbelig Receptor Gene Family AT1G78980 50.5 6.4e-145 511.5
HCH4g1561 . 22 693 Strubbelig Receptor Gene Family AT1G78980 52.1 4.5e-130 462.2
HCH6g0029 . 1 726 Strubbelig Receptor Gene Family AT1G53730 60.2 2.0e-210 729.2
HCH4g1561 . 1 701 Strubbelig Receptor Gene Family AT1G53730 63.4 8.2e-196 680.6
HCH3g0962 . 24 701 Strubbelig Receptor Gene Family AT1G53730 53.5 8.9e-150 527.7
HCH6g0029 . 11 720 Strubbelig Receptor Gene Family AT3G14350 53.4 1.0e-190 663.7
HCH4g1561 . 6 699 Strubbelig Receptor Gene Family AT3G14350 57.0 3.6e-172 602.1
HCH3g0962 . 234 708 Strubbelig Receptor Gene Family AT4G22130 69.4 5.7e-176 614.4
HCH4g1561 . 394 707 Strubbelig Receptor Gene Family AT4G22130 66.8 5.4e-118 421.8
HCH6g0029 . 388 716 Strubbelig Receptor Gene Family AT4G22130 62.5 1.3e-116 417.2
HCH7g0172 . 480 788 Strubbelig Receptor Gene Family AT4G22130 60.8 8.6e-108 387.9
HCH14g0886 . 415 739 Strubbelig Receptor Gene Family AT4G22130 53.9 3.0e-100 362.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81488 PF07714 PK_Tyr_Ser-Thr 1.30E-41 CL0016 HCH PK