Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1561 ATGGATTGGAGATGGAGAGAGCTAGTGTCTCTCTTCCTTGTTTGCATTGTGGGGTTGAAGCCCACTTCCATTAATGGAGCTACAGATCCAGGAGATGCTTCTGCTTTAAGAGTTTTATACAGCAGCTTAAACTCGCCACAACAATTAACCCAGTGGAACGCAAATGGTGATGATCCATGTGGACAATCTTGGAAGGGGATTACTTGCTCTGGCTCACGGGTTACAGAAATAAACTTATCTGGCCTTGGGCTTAGTGGATCTCTAGGATATCAGCTATCAAGTTTGACATCGTTAACTAAGCTAGATATGAGCAATAACAATATTGGAGGCGAGATAGTTTATCAACTTCCACCAAACCTGCAGATATTAAATCTTGCGCGAAACAACTTCAATAAAGGCCTCCCTTACTCCATTTCCTTGATGACTACTCTCCAATACTTAGATATCAGCCATAATCAGCTTCAGGATTCACTGATTGATATGTATGGGCAGCTTACTTCCCTCTCCACATTGGATCTATCATTTAATTCTCTGTCGGGCAACCTCCCTCAGAGTTTTAGCTCCCTTTCTAGCCTCAACACCATGTATTTGCAAAACAACCAGTTCACTGGCACAATTGATGTCCTTGCAAATCTTCCTCTTGAAAACCTGAATGTTGAAAATAACCGTTTCACTGGTTGGATCCCTGAACAACTGAAAAACATCAATCTGCAGAAAAATGGGAACTCTTGGAGCTCAGGTCCTGCACCCCCTCCACCACCTGGTACACCTCCAGCCACCAAAACGGACCAAAATCGCAATGCTGGTAGAAACAATTCAAATCGCGGTTCTGATAAAGGTGGAAAATCAGGAATTGGTGGTGGTGCCATTGCAGGAATTATCATCTCTGTGCTAGTTGTTGGAGCCATAGCAGCATTCTTTCTCGTCAGAAGGAAATCCAAGAGATCATCTTCAGACATAGAAAAGCTTGACAACCAACCTTTGCAACCTCTTAATTTGAATGAAACACAAGAAATGAAATCTATGGAGACTTCCTCCGCATTCTATCCAACAACATTTGATACTTCTGCTGCAATCAATCTTAAACCCCCACCAGTTGATCGTCATAAATCATTTGATGAGGAAGACTTCTCAAAAAAAGCTGTCGCTGTTGTTGCCAAGAAGAAGGCTAGTGCAGCTCCTATTAACGTGAAATCATATTCAATAGCAGACCTGCAAATGGCTACAGGCAGTTTTAGTGTTGACAATCTTCTTGGTGAGGGATCATTTGGACGTGTTTATCGGGCTGAGTTTGATGATGGCAAGGTTCTTGCTGTGAAGAAAATAGATTCATCTGCCTTACCTAGGGAATTATCTGAAGATTTCACGGAGATTGTTTCACAAGTCTCTCTGTTACACCATCCCAATATAACTGAGCTTGTGGGTTATTGCTCAGAGCATGGCCAGCATCTGCTTGTATATGAGTTCCATAAAAATGGCTCGCTTTATGACTTTTTGCATCTATCAGATGAATATAACAAGCCTCTGACGTGGAATTCACGCGTGAAGATTGCTTTGGGGACAGCACGTGCATTAGAGTATCTTCACGAAGTTTGTTCCCCATCAATTGTTCATAGAAATATTAAGTCTGCCAACATATTACTGGATGTGGAACTAAGTCCCCACCTTTCGGATTCAGGACTGGGAAGCTTTGTACCAAACGCAGATCAGGCGTTGGATCACAATGCGGGATCAGGATACAGTGGCCCCGAGGTTACCATGTCTGGCCAATATACTCTGAAAAGCGATGTCTATAGTTTTGGAGTAGTCATGTTAGAGCTGCTTACTGGACGCAAACCATTTGATAGTTCTAGGCCGAGATCTGAGCAATCTTTGGTTCGATGGGCTACACCTCAGCTCCATGACATTGATGCTTTGACCAAAATGGTTGATCCAGAACTCAAGGGGCTCTACCCAGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCACTTTGCGTCCAGACTGAACCTGAGTTCCGACCTCCAATGTCAGAGGTGGTTGAAGCATTGGTCCGCCTCGTGCAGCGAGCTAACATGAGTAAGAGAACATTTGGAAATGACAATATAACCTCTCCAAGAGGTGAAAACACAGGTGGGGAGGACACACCATAA 2154 43.41 MDWRWRELVSLFLVCIVGLKPTSINGATDPGDASALRVLYSSLNSPQQLTQWNANGDDPCGQSWKGITCSGSRVTEINLSGLGLSGSLGYQLSSLTSLTKLDMSNNNIGGEIVYQLPPNLQILNLARNNFNKGLPYSISLMTTLQYLDISHNQLQDSLIDMYGQLTSLSTLDLSFNSLSGNLPQSFSSLSSLNTMYLQNNQFTGTIDVLANLPLENLNVENNRFTGWIPEQLKNINLQKNGNSWSSGPAPPPPPGTPPATKTDQNRNAGRNNSNRGSDKGGKSGIGGGAIAGIIISVLVVGAIAAFFLVRRKSKRSSSDIEKLDNQPLQPLNLNETQEMKSMETSSAFYPTTFDTSAAINLKPPPVDRHKSFDEEDFSKKAVAVVAKKKASAAPINVKSYSIADLQMATGSFSVDNLLGEGSFGRVYRAEFDDGKVLAVKKIDSSALPRELSEDFTEIVSQVSLLHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDFLHLSDEYNKPLTWNSRVKIALGTARALEYLHEVCSPSIVHRNIKSANILLDVELSPHLSDSGLGSFVPNADQALDHNAGSGYSGPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRPRSEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTFGNDNITSPRGENTGGEDTP 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12183257 12190945 - evm.model.ptg000015l.1561 HCH4g1561 543805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1561 717 MobiDBLite consensus disorder prediction 697 717 - -
HCH4g1561 717 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
HCH4g1561 717 ProSiteProfiles Protein kinase domain profile. 412 687 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g1561 717 Gene3D Transferase(Phosphotransferase) domain 1 491 706 - -
HCH4g1561 717 Gene3D Ribonuclease Inhibitor 29 253 IPR032675 -
HCH4g1561 717 Pfam Protein tyrosine and serine/threonine kinase 414 684 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g1561 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 490 698 - -
HCH4g1561 717 Pfam Leucine Rich Repeat 214 234 IPR001611 GO:0005515(InterPro)
HCH4g1561 717 Pfam Leucine Rich Repeat 119 139 IPR001611 GO:0005515(InterPro)
HCH4g1561 717 Pfam Leucine Rich Repeat 167 189 IPR001611 GO:0005515(InterPro)
HCH4g1561 717 Pfam Leucine Rich repeat 142 156 IPR001611 GO:0005515(InterPro)
HCH4g1561 717 Pfam Leucine Rich repeat 95 113 IPR001611 GO:0005515(InterPro)
HCH4g1561 717 ProSitePatterns Protein kinases ATP-binding region signature. 418 441 IPR017441 GO:0005524(InterPro)
HCH4g1561 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 255 - -
HCH4g1561 717 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 374 489 - -
HCH4g1561 717 SUPERFAMILY Protein kinase-like (PK-like) 394 684 IPR011009 -
HCH4g1561 717 Gene3D Phosphorylase Kinase; domain 1 374 489 - -
HCH4g1561 717 CDD STKc_IRAK 418 687 - -
HCH4g1561 717 PRINTS Leucine-rich repeat signature 144 157 - -
HCH4g1561 717 PRINTS Leucine-rich repeat signature 165 178 - -
HCH4g1561 717 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 163 689 IPR046959 -
HCH4g1561 717 SUPERFAMILY L domain-like 28 234 - -
HCH4g1561 717 MobiDBLite consensus disorder prediction 260 279 - -
HCH4g1561 717 MobiDBLite consensus disorder prediction 238 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0962 HCH-Chr3:9299332 HCH4g1561 HCH-Chr4:12183257 2.70E-135 dispersed
HCH4g1561 HCH-Chr4:12183257 HCH7g0172 HCH-Chr7:1136776 2.70E-98 dispersed
HCH7g0637 HCH-Chr7:6230480 HCH4g1561 HCH-Chr4:12183257 3.00E-06 transposed
HCH4g1561 HCH-Chr4:12183257 HCH6g0029 HCH-Chr6:457729 5.60E-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81488 PF07714 PK_Tyr_Ser-Thr 1.30E-41 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1561 - - - 0.0