Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g1571 | ATGACGTCTCGTGGTTCATCGGCTTCTACCAATGGCTTGTTACCGTTAACCGTATCGACATCGGGCCGGCATCGGGACATGGAGACTGGGATCTCTTCTACTAAAAGCTTCCATGATGATGAGGAAGATGAGGAATTAGAACCTGATTCTGATCCTTTTGATATTGAGAATACTAAAAATGCGCCTCTCGAGACGCTCAAGCGATGGAGGCAAGCTGCATTGGTGCTTAATGCATCTCGAAGATTTCGATATACTTTGGACTTGAAAAACGAGGAAGAGAAAGATCAAAGGAGGAGGATGATTAGAGCACATGCACAAGTCATAAGGGCAGCACTGCTTTTCAAATTGGCTGGGGAACGTCAAAATGGTTCATCAGTATCACCTCCGACCTCAAGTGGTGATTATGCAATTAGTTTAGAACATCTAGCTTCATTGACCCGAGAACAAAAAATTTCTTCTCTACAACAATATGGAGGAGCTAAAGGCTTATCAAATTTACTGAAAACAAATGTAGAGAAGGGAATTTCGGGGGACGAAACTGATTTAGTGAAAAGAAGAAATTCATTTGGATCAAATACATATCCTCGTAAAAAAGGGCGGAGTTTCTTGAAATTTCTCTGGGAAGCTTGGCAAGATTTGACCCTCATCATCTTGATTATAGCTGCAGTGGCATCATTAGCTTTGGGGATTAAAACCAAGGGTTTGGAAGAAGGATGGTATGATGGAGGGAGTATTGCGTTTGCTGTGTTTCTTGTAATAATGGTCACAGCGGTTAGTGATTATCGACAGTCTCTTCAGTTTCAAAATTTAAATGAGGAGAAACAGAACATTCAATTAGAGATCATAAGAGATGGTAGAACTGTAAAAGTATCAATATTTGACCTTGTTGTTGGGGATGTTGTACCTCTTAAAATAGGAGATCAGATCCCTGCTGATGGGATTTTGATCACTGGTCATTCACTTGCCATAGATGAATCAAGCATGACAGGTGAAAGCAAGATTGTTCGCAAGGATCAGAAAGCTCCCTTTATGATGTCTGGTTGTAAAGTTGCAGATGGAGTTGGTACCATGATGGTAACTGCTGTTGGAATCAATACTGAATGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGGGAAGAAACTCCCTTGCAGGTTCGCTTGAACGGAGTTGCAACTTTCATAGGCATTGTCGGGCTTGTGGTTGCTGTTTCTGTGCTGGCTGTCCTTTTGGGCAGATACTTCACGGGAAATACCCATGATGCGAATGGGAACCAAGGGTTTGTGCGTGGCCAAACGAGTCTGGGTGATGCTGTAGATGGAGTTATCAAAATCGTTACTGTTGCTGTTACTATTGTGGTCGTTGCAGTACCAGAAGGACTTCCTCTTGCTGTCACCCTTACCTTAGCATACTCCATGAGGAAGATGATGGCTGATAAAGCGTTGGTTCGTAGACTGTCTGCTTGTGAAACAATGGGCTCTGCAACAACAATTTGCAGTGATAAGACTGGAACTTTGACTTTAAATGAGATGACTGTGGTTGAAGCATGTGTTGGAAAGAAAAAGATTAATCCCCCAGATGATCCGTTGCAGTTGCACTCATTAGTTCTTGCGCTGCTATATGAGGGCATTGCTCAAAACAGCACGGGCAATGTTTTTGTGGCTAAGGAAGGGGGACGCTTAGAGGTGTCTGGATCTCCAACCGAAAAGGCTATTCTATCGTGGGCTGTCAAGTTGGGAATGAAGTTTGATGTTATCAAATCAGAATCCGAGGTTCTTCATGTTTTCCCTTTCAATTCTGAGAAAAAGCGGGGAGGTGTTGCATTAAAGCGGGCTAACTCAGAAGTTTATATACATTGGAAAGGAGCAGCAGAGATGGTCTTGTCTTCATGTACAAAATATCTTAACTTGAATGGCGAAGTGCACTCCTTTGAAAATGATGATGAGGATTATTTTAAGGCGGCTATTAATGAAATGGCTGCAAATAGTTTGCGTTGTGTTGCCATTGCATATAGATCTTATGAATTGGAGAAGGTTCCAACAGATGATGAGAGTTTGGATCAATGGGATTTGCCAGCCGATGATCTTGTTCTGCTTGCAATTGTTGGTATAAAGGATCCTTGTCGCGACGGTGTTGCGGAAGCTGTGAAAGTATGCACTGATGCTGGTGTCAAGGTGCGCATGGTCACTGGAGATAATCTGCAGACTGCAAAAGCGATAGCAATAGAGTGTGGGATACTAAAATCAACTGACGATGCCACTGAACCTACAGTAATTGAAGGAAAAGTATTCCGTGTATTACCTGAGAAAGAAAGAGAACAAATCGCCAAGAAAATAACGGTTATGGGGAGGTCTTCTCCTAATGATAAGCTTTTGCTTGTCCAAGCGCTACGAAAGGGAGGGGAAGTCGTTGCGGTAACTGGAGATGGGACTAATGATGCTCCCGCACTTCATGAGGCAGATATCGGTCTTTCTATGGGCATTCAAGGCACTGAAGTTGCTAAAGAGAGTTCTGATATTGTCATCTTAGATGATAACTTTGCTTCAGTTGTAAAGGTTGTCCGCTGGGGGCGTTCTGTGTATGCAAACATTCAAAAGTTTATCCAGTTTCAGCTCACTGTAAATGTTGCTGCTCTGGTAATTAATGTTGTTGCAGCTGTGTCTTCTGGTGATGTTCCTTTAAATACCGTGCAGCTTCTCTGGGTCAACTTGATCATGGATACGCTTGGTGCCCTCGCTTTAGCTACTGAACCACCAACAGACCATCTTATGCATAGGTCACCTGTTGGGCGAAGGGAACCCCTTATAACTAATATAATGTGGAGGAACTTGATCATACAGGCTTTATATCAAGTTGGTGTCCTCCTTGTGCTCAACTTCTATGGCACCGATGTTCTTCAATTAAATAGGGATAGCAGGGAGCGCGCCTTTAATGTGAAAAATACAGTGATTTTCAATGCATTTGTCCTCTGCCAAATATTTAATGAATTCAATGCTCGAAAACCAGACGAAATGAACGTGTTCAGTGGAGTGACAAAAAACTACCTATTTATGGGAATAGTTGGATCAACATTTGTGCTTCAGATACTCATCATTGAATTTCTTGGAAAGTTTACGACCACTGTCAGACTCGATTGGAAGCAATGGCTCGTCTGCGTCGCAATCGGCCTTGTCAGCTGGCCACTAGCGGTGGTAGGCAAACTCATCCCTGTTCCCAAGACCCCATTGGCTAAGTACTTTGCAAAGCCAGTTCAACGATGCAGGAGGACACGTGGTGCATAA | 3285 | 43.04 | MTSRGSSASTNGLLPLTVSTSGRHRDMETGISSTKSFHDDEEDEELEPDSDPFDIENTKNAPLETLKRWRQAALVLNASRRFRYTLDLKNEEEKDQRRRMIRAHAQVIRAALLFKLAGERQNGSSVSPPTSSGDYAISLEHLASLTREQKISSLQQYGGAKGLSNLLKTNVEKGISGDETDLVKRRNSFGSNTYPRKKGRSFLKFLWEAWQDLTLIILIIAAVASLALGIKTKGLEEGWYDGGSIAFAVFLVIMVTAVSDYRQSLQFQNLNEEKQNIQLEIIRDGRTVKVSIFDLVVGDVVPLKIGDQIPADGILITGHSLAIDESSMTGESKIVRKDQKAPFMMSGCKVADGVGTMMVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLVVAVSVLAVLLGRYFTGNTHDANGNQGFVRGQTSLGDAVDGVIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNEMTVVEACVGKKKINPPDDPLQLHSLVLALLYEGIAQNSTGNVFVAKEGGRLEVSGSPTEKAILSWAVKLGMKFDVIKSESEVLHVFPFNSEKKRGGVALKRANSEVYIHWKGAAEMVLSSCTKYLNLNGEVHSFENDDEDYFKAAINEMAANSLRCVAIAYRSYELEKVPTDDESLDQWDLPADDLVLLAIVGIKDPCRDGVAEAVKVCTDAGVKVRMVTGDNLQTAKAIAIECGILKSTDDATEPTVIEGKVFRVLPEKEREQIAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLIIQALYQVGVLLVLNFYGTDVLQLNRDSRERAFNVKNTVIFNAFVLCQIFNEFNARKPDEMNVFSGVTKNYLFMGIVGSTFVLQILIIEFLGKFTTTVRLDWKQWLVCVAIGLVSWPLAVVGKLIPVPKTPLAKYFAKPVQRCRRTRGA | 1094 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 12260811 | 12275981 | - | evm.model.ptg000015l.1571 | HCH4g1571 | 543815 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g1571 | 1094 | FunFam | Calcium-transporting ATPase | 208 | 265 | - | - | |
| HCH4g1571 | 1094 | SUPERFAMILY | Calcium ATPase, transduction domain A | 278 | 373 | IPR008250 | - | |
| HCH4g1571 | 1094 | PRINTS | Sodium/potassium-transporting ATPase signature | 493 | 514 | - | - | |
| HCH4g1571 | 1094 | PRINTS | Sodium/potassium-transporting ATPase signature | 243 | 263 | - | - | |
| HCH4g1571 | 1094 | PRINTS | Sodium/potassium-transporting ATPase signature | 880 | 901 | - | - | |
| HCH4g1571 | 1094 | PRINTS | Sodium/potassium-transporting ATPase signature | 619 | 637 | - | - | |
| HCH4g1571 | 1094 | Pfam | haloacid dehalogenase-like hydrolase | 498 | 822 | - | - | |
| HCH4g1571 | 1094 | FunFam | Calcium-transporting ATPase | 61 | 117 | - | - | |
| HCH4g1571 | 1094 | Pfam | Cation transporting ATPase, C-terminus | 893 | 1069 | IPR006068 | - | |
| HCH4g1571 | 1094 | Gene3D | - | 208 | 1062 | - | - | |
| HCH4g1571 | 1094 | Gene3D | - | 181 | 376 | - | - | |
| HCH4g1571 | 1094 | FunFam | Calcium-transporting ATPase | 255 | 376 | - | - | |
| HCH4g1571 | 1094 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
| HCH4g1571 | 1094 | Pfam | E1-E2 ATPase | 278 | 478 | - | - | |
| HCH4g1571 | 1094 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| HCH4g1571 | 1094 | Pfam | Cation transporter/ATPase, N-terminus | 157 | 225 | IPR004014 | - | |
| HCH4g1571 | 1094 | NCBIfam | HAD-IC family P-type ATPase | 245 | 415 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH4g1571 | 1094 | NCBIfam | HAD-IC family P-type ATPase | 774 | 888 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH4g1571 | 1094 | NCBIfam | HAD-IC family P-type ATPase | 440 | 525 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH4g1571 | 1094 | FunFam | Calcium-transporting ATPase 9 plasma membrane-type | 354 | 524 | - | - | |
| HCH4g1571 | 1094 | FunFam | Calcium-transporting ATPase | 825 | 1074 | - | - | |
| HCH4g1571 | 1094 | Gene3D | - | 510 | 708 | IPR023299 | GO:0000166(InterPro) | |
| HCH4g1571 | 1094 | SUPERFAMILY | HAD-like | 498 | 913 | IPR036412 | - | |
| HCH4g1571 | 1094 | FunFam | Calcium-transporting ATPase | 510 | 708 | - | - | |
| HCH4g1571 | 1094 | Gene3D | - | 497 | 853 | IPR023214 | - | |
| HCH4g1571 | 1094 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 507 | 705 | IPR023299 | GO:0000166(InterPro) | |
| HCH4g1571 | 1094 | Gene3D | - | 63 | 116 | - | - | |
| HCH4g1571 | 1094 | SFLD | p-type atpase | 482 | 860 | IPR044492 | - | |
| HCH4g1571 | 1094 | CDD | P-type_ATPase_Ca_PMCA-like | 184 | 941 | - | - | |
| HCH4g1571 | 1094 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 158 | 1072 | IPR023298 | - | |
| HCH4g1571 | 1094 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 51 | 93 | IPR024750 | GO:0005516(InterPro) | |
| HCH4g1571 | 1094 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 145 | 1072 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| HCH4g1571 | 1094 | PRINTS | P-type cation-transporting ATPase superfamily signature | 808 | 827 | - | - | |
| HCH4g1571 | 1094 | PRINTS | P-type cation-transporting ATPase superfamily signature | 723 | 733 | - | - | |
| HCH4g1571 | 1094 | PRINTS | P-type cation-transporting ATPase superfamily signature | 500 | 514 | - | - | |
| HCH4g1571 | 1094 | PRINTS | P-type cation-transporting ATPase superfamily signature | 832 | 844 | - | - | |
| HCH4g1571 | 1094 | PRINTS | P-type cation-transporting ATPase superfamily signature | 324 | 338 | - | - | |
| HCH4g1571 | 1094 | PRINTS | P-type cation-transporting ATPase superfamily signature | 701 | 712 | - | - | |
| HCH4g1571 | 1094 | FunFam | Calcium-transporting ATPase | 701 | 853 | - | - | |
| HCH4g1571 | 1094 | SFLD | C1.7: P-type atpase like | 482 | 860 | - | - | |
| HCH4g1571 | 1094 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 502 | 508 | IPR018303 | - | |
| HCH4g1571 | 1094 | SMART | Cation_ATPase_N_a_2 | 159 | 230 | IPR004014 | - | |
| HCH4g1571 | 1094 | PANTHER | CATION TRANSPORTING ATPASE | 122 | 1072 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g0210 | HCH-Chr10:1702521 | HCH4g1571 | HCH-Chr4:12260811 | 0.00E+00 | dispersed | |
| HCH10g0740 | HCH-Chr10:6982007 | HCH4g1571 | HCH-Chr4:12260811 | 1.40E-289 | dispersed | |
| HCH14g0369 | HCH-Chr14:32659956 | HCH4g1571 | HCH-Chr4:12260811 | 1.70E-247 | dispersed | |
| HCH4g0577 | HCH-Chr4:3802373 | HCH4g1571 | HCH-Chr4:12260811 | 2.70E-80 | dispersed | |
| HCH4g1571 | HCH-Chr4:12260811 | HCH9g1360 | HCH-Chr9:45094899 | 1.50E-249 | dispersed | |
| HCH4g1571 | HCH-Chr4:12260811 | HCH7g1264 | HCH-Chr7:45540596 | 1.00E-298 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH4g1571 | K01537 | - | csv:101214801 | 1843.17 |