Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1575 ATGGATGGAATTCATGGGAGTGATGGGAGGATGCATATGAGTCATGCACATCATTCTCTACATGCACAATCTGTGCAAGAACAGGAACATCATGAATTGCATTATATGAGCAATGGGAATGGAATGGTTGATGACCATGAAAATGAAGGTCATGCTCCTGTTGTGGTTATCGAAAGGGAACCTCCTTCCGACCACGGTGATCTCGCTGAGAGTCGCGGTGTTATGGTGGATCGAGGAGGTGATGGCTGCGATCAGCTCACGTTGTCGTACCAGGGTCAAGTTTATGTTTTTGATTCCGTCTCGCCTGAAAAGGTTCAAGCCGTGTTATTATTATTAGGGGGTCGTGAAGTACCTCTGCGTGTTCCTCCTATCCCAATAGCTAATCAACAGAATGACAGGCATCTCACTGACGAAGCATTTAACCAGGCACTTTCCAGTATTCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAACGTAATAAAGGTCAATTTACGTCTTCTAAGCCCATTCACGAAGATTCATCATCAGCCGTAACAAGCTGGGAATCGAATGAGAGCTGGAGTACAGATGGGAATGGATCCCAACAACAAGAAATTCTCTGCCGGCATTGTGGTATAAGTGAGAAGTCTACACCAATGATGCGGCGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGTGGACTCATGTGGGCAAATAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTCATTCGAATAAAAATGAGAATGTATTGCAGAATGGAGATTTGGAGTCCAATCCAAAAAGTTCTTAG 912 44.96 MDGIHGSDGRMHMSHAHHSLHAQSVQEQEHHELHYMSNGNGMVDDHENEGHAPVVVIEREPPSDHGDLAESRGVMVDRGGDGCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPPIPIANQQNDRHLTDEAFNQALSSIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSSAVTSWESNESWSTDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQAHSNKNENVLQNGDLESNPKSS 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12371255 12376079 + evm.model.ptg000015l.1575 HCH4g1575 543819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1575 303 CDD ZnF_GATA 232 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g1575 303 ProSiteProfiles CCT domain profile. 156 198 IPR010402 GO:0005515(InterPro)
HCH4g1575 303 MobiDBLite consensus disorder prediction 1 15 - -
HCH4g1575 303 Pfam tify domain 85 113 IPR010399 -
HCH4g1575 303 Pfam CCT motif 156 198 IPR010402 GO:0005515(InterPro)
HCH4g1575 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 278 - -
HCH4g1575 303 ProSitePatterns GATA-type zinc finger domain. 232 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g1575 303 MobiDBLite consensus disorder prediction 191 225 - -
HCH4g1575 303 SMART GATA_3 226 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g1575 303 Pfam GATA zinc finger 232 268 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g1575 303 ProSiteProfiles GATA-type zinc finger domain profile. 226 283 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g1575 303 SMART tify_2 79 114 IPR010399 -
HCH4g1575 303 PANTHER GATA TRANSCRIPTION FACTOR 28 30 291 IPR045280 GO:0006355(InterPro)
HCH4g1575 303 MobiDBLite consensus disorder prediction 271 303 - -
HCH4g1575 303 MobiDBLite consensus disorder prediction 1 29 - -
HCH4g1575 303 Gene3D - 222 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
HCH4g1575 303 ProSiteProfiles Tify domain profile. 79 114 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1575 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1575 HCH-Chr4:12371255 HCH7g0821 HCH-Chr7:16555480 7.50E-58 dispersed
HCH4g1575 HCH-Chr4:12371255 HCH8g1283 HCH-Chr8:47985896 2.30E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g1575 . 1 231 Tify Gene Family AT3G21175 56.7 1.7e-59 226.1
HCH4g0267 . 52 285 Tify Gene Family AT4G24470 50.9 3.8e-60 228.8
HCH4g1575 . 74 274 Tify Gene Family AT4G24470 53.5 4.1e-46 182.2
HCH4g1575 . 1 288 Tify Gene Family AT1G51600 60.5 2.4e-88 322.4
HCH4g0267 . 23 246 Tify Gene Family AT1G51600 51.8 8.0e-52 201.1
HCH7g0821 . 92 288 Tify Gene Family AT1G51600 57.6 1.4e-51 200.3
HCH4g0267 . 52 285 Tify Gene Family AT4G24470 50.9 3.8e-60 228.8
HCH4g1575 . 74 274 Tify Gene Family AT4G24470 53.5 4.1e-46 182.2
HCH4g1575 . 1 288 Tify Gene Family AT1G51600 60.5 2.4e-88 322.4
HCH4g0267 . 23 246 Tify Gene Family AT1G51600 51.8 8.0e-52 201.1
HCH7g0821 . 92 288 Tify Gene Family AT1G51600 57.6 1.4e-51 200.3
HCH4g1575 . 1 231 Tify Gene Family AT3G21175 56.7 1.7e-59 226.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008711 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33533 PF06203 CCT 8.70E-15 CL0281 HCH TF