Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1575 ATGGATGGAATTCATGGGAGTGATGGGAGGATGCATATGAGTCATGCACATCATTCTCTACATGCACAATCTGTGCAAGAACAGGAACATCATGAATTGCATTATATGAGCAATGGGAATGGAATGGTTGATGACCATGAAAATGAAGGTCATGCTCCTGTTGTGGTTATCGAAAGGGAACCTCCTTCCGACCACGGTGATCTCGCTGAGAGTCGCGGTGTTATGGTGGATCGAGGAGGTGATGGCTGCGATCAGCTCACGTTGTCGTACCAGGGTCAAGTTTATGTTTTTGATTCCGTCTCGCCTGAAAAGGTTCAAGCCGTGTTATTATTATTAGGGGGTCGTGAAGTACCTCTGCGTGTTCCTCCTATCCCAATAGCTAATCAACAGAATGACAGGCATCTCACTGACGAAGCATTTAACCAGGCACTTTCCAGTATTCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAACGTAATAAAGGTCAATTTACGTCTTCTAAGCCCATTCACGAAGATTCATCATCAGCCGTAACAAGCTGGGAATCGAATGAGAGCTGGAGTACAGATGGGAATGGATCCCAACAACAAGAAATTCTCTGCCGGCATTGTGGTATAAGTGAGAAGTCTACACCAATGATGCGGCGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGTGGACTCATGTGGGCAAATAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTCATTCGAATAAAAATGAGAATGTATTGCAGAATGGAGATTTGGAGTCCAATCCAAAAAGTTCTTAG 912 44.96 MDGIHGSDGRMHMSHAHHSLHAQSVQEQEHHELHYMSNGNGMVDDHENEGHAPVVVIEREPPSDHGDLAESRGVMVDRGGDGCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPPIPIANQQNDRHLTDEAFNQALSSIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSSAVTSWESNESWSTDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQAHSNKNENVLQNGDLESNPKSS 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12371255 12376079 + evm.model.ptg000015l.1575 HCH4g1575 543819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1575 303 CDD ZnF_GATA 232 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g1575 303 ProSiteProfiles CCT domain profile. 156 198 IPR010402 GO:0005515(InterPro)
HCH4g1575 303 MobiDBLite consensus disorder prediction 1 15 - -
HCH4g1575 303 Pfam tify domain 85 113 IPR010399 -
HCH4g1575 303 Pfam CCT motif 156 198 IPR010402 GO:0005515(InterPro)
HCH4g1575 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 278 - -
HCH4g1575 303 ProSitePatterns GATA-type zinc finger domain. 232 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g1575 303 MobiDBLite consensus disorder prediction 191 225 - -
HCH4g1575 303 SMART GATA_3 226 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g1575 303 Pfam GATA zinc finger 232 268 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g1575 303 ProSiteProfiles GATA-type zinc finger domain profile. 226 283 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g1575 303 SMART tify_2 79 114 IPR010399 -
HCH4g1575 303 PANTHER GATA TRANSCRIPTION FACTOR 28 30 291 IPR045280 GO:0006355(InterPro)
HCH4g1575 303 MobiDBLite consensus disorder prediction 271 303 - -
HCH4g1575 303 MobiDBLite consensus disorder prediction 1 29 - -
HCH4g1575 303 Gene3D - 222 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
HCH4g1575 303 ProSiteProfiles Tify domain profile. 79 114 IPR010399 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1575 HCH-Chr4:12371255 HCH7g0821 HCH-Chr7:16555480 7.50E-58 dispersed
HCH4g1575 HCH-Chr4:12371255 HCH8g1283 HCH-Chr8:47985896 2.30E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33533 PF06203 CCT 8.70E-15 CL0281 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1575 - - - 0.0