Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g1590 | ATGGATCCAAAGAAGTCAAACAAAATAAGAGATATTGTTAGGCTTCAACAAATCCTCAAGAAGTGGAAAAGGCTTGCAAATGCATCAAAAACTTCTTCCATTTCCACCAATAGCAGTAACAAGCTAGGTGGTATCAAGTTTATAAAGAGAACACTTTCCTTCTCAGATGTTAGTGGAGCTACTGATGTTGTTCCAAAAGGGTATCTAGCAGTTTGTGTTGGTGAAGAGCTTAAGAGGTTTATAATCCCAACTGAGTACTTGGGTCACCAAGCTTTTCGAATCTTGCTTCGAGAAGCCGAAGAAGAGTTCGGTTTTCAGCAAGAGGGTGTGCTTCAGATTCCATGTGAGGTATCAGTGTTTGAAAGAATCTTGAAGATTGTTCAACATAACAAGGAAGATTTGTTGTTTTTTAATAATCATTCTGAAAATGAAATGGTTGGATTCTGCTCATCTGAATGTCCTCAAATGTGTAGATGA | 477 | 37.74 | MDPKKSNKIRDIVRLQQILKKWKRLANASKTSSISTNSSNKLGGIKFIKRTLSFSDVSGATDVVPKGYLAVCVGEELKRFIIPTEYLGHQAFRILLREAEEEFGFQQEGVLQIPCEVSVFERILKIVQHNKEDLLFFNNHSENEMVGFCSSECPQMCR | 158 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 12602583 | 12603059 | + | evm.model.ptg000015l.1590 | HCH4g1590 | 543834 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g1590 | 158 | Pfam | Auxin responsive protein | 14 | 126 | IPR003676 | GO:0009733(InterPro) | |
| HCH4g1590 | 158 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 15 | 126 | IPR003676 | GO:0009733(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g0282 | HCH-Chr12:1579828 | HCH4g1590 | HCH-Chr4:12602583 | 9.70E-39 | dispersed | |
| HCH2g0500 | HCH-Chr2:48659961 | HCH4g1590 | HCH-Chr4:12602583 | 6.00E-19 | dispersed | |
| HCH2g0934 | HCH-Chr2:52757858 | HCH4g1590 | HCH-Chr4:12602583 | 1.90E-14 | dispersed | |
| HCH3g1213 | HCH-Chr3:44560512 | HCH4g1590 | HCH-Chr4:12602583 | 2.10E-10 | dispersed | |
| HCH4g1590 | HCH-Chr4:12602583 | HCH7g0512 | HCH-Chr7:3875003 | 8.80E-18 | dispersed | |
| HCH4g1590 | HCH-Chr4:12602583 | HCH1g0167 | HCH-Chr1:13112661 | 3.20E-20 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH4g1590 | K14488 | - | vvi:100265117 | 191.045 |