Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g1622 ATGGACTTGACAATTCTAAAGTCTGAGTTGTTACCTGTTAGAAGGAATGGAAGTCCTTTGGAAAGTGGTTTGATGGCTGTCAAGGGCGTAAGGAGACGGCGAAGAAGTTCTGACAACAGCGATGATCTACGGCGGAAGTCACCATTGCGGCTGCCACAGGCAGATCATTCTACCACAACTTCCTCAACAAAAAGGAGTTCGAGGTTCCGTGGAGTTAGCAGGCACCGATGGACTGGACGATTCGAAGCTCATTTATGGGATAAAGGCTCTTGGAATCCAACACAAAGGAAGAAGGGAAAGCAAGTTTATCTAGGCGCTTATGATGAAGAAGAATCAGCTGCTAGAGCCTATGATTTGGCTGCACTCAAGTATTGGGGAACATCAACTTTCACAAATTTCCCGATATCTGATTATGAGAAAGAAATTGAATTGATGATAACAGTCACAAAAGAGGAATACCTGGCCTCTTTGAGAAGGAGAAGCAGTGGCTTCTCTAGAGGTGTGTCTAAGTATCGAGGCGTCGCAAGGCACCATCACAATGGGAGGTGGGAAGCAAGAATAGGAAGAGTATTTGGGAACAAGTATCTGTACCTCGGAACTTACAGCACACAAGAGGAGGCTGCGAGGGCTTATGATATAGCAGCAATAGAATACAGAGGAATCAATGCAGTGACCAACTTTGAATTGAGCACTTATATAAGATGGCTGAAACCAGACCCAGATTCCTTAAAACCAGGGAAAGAACCTCAGACGACACAGCCAGAAACAAGACATTCTCTAACTGATCATACCTTCCAACCAAACACAACTTTGATAACTCCAGAAAGAAGTAATGTTTGTTTCCAAACAACAACAAACAAGTCTCCATCTCCAACAGCTCTTAGTCTCCTTCTAAAATCCTCAATATTCAGAGACCTTGTGGAGAAGAATCTGAATTTCAATGAAGATGGAAATGGGCATAACTCACCAAATGGTGCAAATCCGTATTTGCACTTTCCCATTCCCAATGCAAGTTTATTGCCAAGTTTACCCCTGTGTGATAAAAGGGATCCATCTCATTGGACAGGTACCCCAAGCATGTGTCCTTTTCATTTCAACCACCGCCACCCTTTGTTTGGTAAAGACCTTTGA 1131 43.5 MDLTILKSELLPVRRNGSPLESGLMAVKGVRRRRRSSDNSDDLRRKSPLRLPQADHSTTTSSTKRSSRFRGVSRHRWTGRFEAHLWDKGSWNPTQRKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYEKEIELMITVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFELSTYIRWLKPDPDSLKPGKEPQTTQPETRHSLTDHTFQPNTTLITPERSNVCFQTTTNKSPSPTALSLLLKSSIFRDLVEKNLNFNEDGNGHNSPNGANPYLHFPIPNASLLPSLPLCDKRDPSHWTGTPSMCPFHFNHRHPLFGKDL 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15075431 15078454 + evm.model.ptg000015l.1622 HCH4g1622 543866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g1622 376 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 58 257 - -
HCH4g1622 376 ProSiteProfiles AP2/ERF domain profile. 170 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1622 376 ProSiteProfiles AP2/ERF domain profile. 68 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1622 376 FunFam AP2-like ethylene-responsive transcription factor 169 230 - -
HCH4g1622 376 FunFam AP2-like ethylene-responsive transcription factor 67 136 - -
HCH4g1622 376 SMART rav1_2 68 140 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1622 376 SMART rav1_2 170 234 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1622 376 MobiDBLite consensus disorder prediction 246 262 - -
HCH4g1622 376 CDD AP2 69 136 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1622 376 MobiDBLite consensus disorder prediction 240 262 - -
HCH4g1622 376 MobiDBLite consensus disorder prediction 22 71 - -
HCH4g1622 376 Gene3D AP2/ERF domain 67 136 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1622 376 Gene3D AP2/ERF domain 169 230 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1622 376 PRINTS Ethylene responsive element binding protein signature 210 230 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1622 376 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1622 376 SUPERFAMILY DNA-binding domain 169 230 IPR016177 GO:0003677(InterPro)
HCH4g1622 376 SUPERFAMILY DNA-binding domain 67 136 IPR016177 GO:0003677(InterPro)
HCH4g1622 376 CDD AP2 169 230 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1622 376 Pfam AP2 domain 67 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1622 376 Pfam AP2 domain 169 220 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g1622 376 MobiDBLite consensus disorder prediction 27 51 - -
HCH4g1622 376 MobiDBLite consensus disorder prediction 52 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1622 HCH-Chr4:15075431 HCH8g0965 HCH-Chr8:45789040 1.80E-77 dispersed
HCH4g1622 HCH-Chr4:15075431 HCH9g0209 HCH-Chr9:1233045 3.50E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33537 PF00847 AP2 2.70E-13 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g1622 - - - 0.0